ampliconflow
Archive records ENA PRJDB12980 SRA PRJDB12980 BioProject PRJDB12980

opens the authoritative record at ENA, SRA or BioSample; this page never replaces it

PRJDB12980 legacy pipeline released 11 Sept 2026

Mikata Five Lakes Survey (PRJDB12980, 16S V4)

Processed by workflow_16s (legacy) Contract v0.1 Licence CC-BY-4.0

These data were processed by the legacy workflow_16s (legacy) pipeline, not by ampliconflow. They are published here for browsing and download exactly as that pipeline left them.

12

Samples

15 runs

1.5k

Features

OTUs at 97%

242.4k

Reads

mapped total

247 KB

Release size

7 files

Reads per sample

log scale
min
11,265
median
19,790
max
33,544

Feature detection

100.0% non-zero

1,500 / 1,500 features

Features with at least one observed read. The remainder are present in the reference set but not detected in these samples.

Composition

Top phyla

  • Chloroflexi 61,355 (25.3%)
  • Bacteroidota 32,548 (13.4%)
  • Proteobacteria 29,076 (12.0%)
  • Actinobacteriota 16,632 (6.9%)
  • Verrucomicrobiota 15,125 (6.2%)
  • Desulfobacterota 11,511 (4.7%)
  • Patescibacteria 6,978 (2.9%)
  • Cyanobacteria 6,634 (2.7%)
  • Planctomycetota 5,217 (2.2%)
  • Nanoarchaeota 4,911 (2.0%)
  • Cloacimonadota 3,396 (1.4%)
  • Firmicutes 2,226 (0.9%)
  • Campilobacterota 1,608 (0.7%)
  • Spirochaetota 1,553 (0.6%)
  • Latescibacterota 1,509 (0.6%)
  • Marinimicrobia_ 1,377 (0.6%)
  • Sva0485 958 (0.4%)
  • NKB15 745 (0.3%)
  • Acidobacteriota 593 (0.2%)
  • Thermotogota 589 (0.2%)

Top genera

  • uncultured 65,143 (26.9%)
  • Acinetobacter 13,590 (5.6%)
  • hgcI_clade 9,639 (4.0%)
  • Desulfatiglans 7,006 (2.9%)
  • Lentimicrobiaceae 6,010 (2.5%)
  • Chloroplast 5,530 (2.3%)
  • WCHB1-41 4,930 (2.0%)
  • SCGC_AAA011-D5 3,176 (1.3%)
  • WCHB1-81 2,480 (1.0%)
  • MSBL8 2,350 (1.0%)
  • Candidatus_Omnitrophus 2,293 (0.9%)
  • Bacteroidetes_VC2.1_Bac22 1,836 (0.8%)
  • LD29 1,815 (0.7%)
  • GIF9 1,740 (0.7%)
  • Chlorobium 1,586 (0.7%)
  • Lenti-02 1,474 (0.6%)
  • Flavobacterium 1,463 (0.6%)
  • Methyloparacoccus 1,423 (0.6%)
  • Marinimicrobia_ 1,377 (0.6%)
  • Candidatus_Moranbacteria 1,362 (0.6%)

Rank-abundance

log-log
1 10 100 1k 10k 1 10 100 1f43f517341c885416eb0ebfc20c46f5: 22321 reads 01499eb2a214281f1122cb881a59f1e5 · uncultured: 7887 reads ecc631f78f5e118c038ee4c6f2faa721 · uncultured: 6799 reads f918ed1cf6209a583c77d24e28ef660a · uncultured: 6449 reads 5b7a354593c6ada8d468d066b6608908 · uncultured: 5689 reads 156ac76dce59f21394a921e329ef420c · uncultured: 5682 reads 8d8a98d2e58dea907a5f2caab32d1b6f · uncultured: 5152 reads a9066aada0f5e81e07648da1b5671557 · uncultured: 5080 reads e94f88adc7fd6167e7629f5b7441ffe3 · uncultured: 4663 reads fde37ef11aea9294dfe52fe23849220a · uncultured: 4646 reads 5e22791f4cf1498a20c9ce02391aae1d: 3570 reads e73732be1c13dd862a907bcf16706eda · Acinetobacter: 2597 reads 0d83203469eb3b61ec02c5f5aa79fee4 · Acinetobacter: 2244 reads b6a1c70e38d4b8ef7f802ed3ae49b496 · Acinetobacter: 2198 reads dddb3e6cda5eb07f969ed23c406f2305 · Acinetobacter: 1942 reads 6ccd7816b16d548484d03121b18fc55c · Acinetobacter: 1875 reads ab55a857b08add89feb79a2863005947 · hgcI_clade: 1616 reads d9053832e7129309ab827dba5298a4dc · Acinetobacter: 1596 reads bdab3ae17daf7420fc524c137fea7ffd · hgcI_clade: 1490 reads 6115f90794ffc7d69fec73858bc3305f · Desulfatiglans: 1405 reads 771c7b4d65997996fff2dac1a66d8bce · Chloroplast: 1320 reads c06ae558e64a855d47e13187bfe94451 · hgcI_clade: 1290 reads ade65e15734d58bdc492a9e34e247903 · Chloroplast: 1229 reads 5b1ff9005a79f91a8962ace5a97b460b · hgcI_clade: 1194 reads 717e5de0b1c332e7e7a5534fc51074bf · hgcI_clade: 1163 reads ed066e4c1cc308d66ed4f1440dcc3652: 1094 reads 6ff85bd4ea3cc43c06d72a83c3b76a6f · Chloroplast: 1051 reads 7ed861b716a851b9a6fb9c04432fc683 · MSBL2: 1009 reads eda7102784e38fe5b56ab3d41bb63ab4 · Desulfatiglans: 976 reads 5ff00b357b783180a7a728e21cca9c43 · Lentimicrobiaceae: 933 reads 9af1cf5b19fd26f10d962e135292ca07 · Lentimicrobiaceae: 931 reads bdb2e46cff5b05a60f7b8862a8d59296 · Chlorobium: 929 reads 0ec203772c6791d4183b98b174455107 · Methyloparacoccus: 916 reads ef93288e2c50f67be8a1fbea8332a0dc · hgcI_clade: 892 reads 5f60be6267635450dfa5075a4b60473b · Bacteroidetes_VC2.1_Bac22: 856 reads 26d91a4bb51c0bd33e6763c14e32714e: 841 reads 9b0934bc16b86c481e059ce72a4bf90c · Desulfatiglans: 809 reads c0815d561843a55271ec2cf5d65be1fd · Desulfatiglans: 799 reads e6a75166ad8cead858260f90129dce79: 788 reads a36c90834b6e807e2d726298cf8ce0ec · Chlorobium: 657 reads fef01d0db8c3341b482d0b5db02d31d4 · hgcI_clade: 656 reads 1e2b70396fef85d53bfaf0d71d107bb1 · Bacteroidetes_VC2.1_Bac22: 589 reads 006316f07469442b0460ff53d04f8e65 · Desulfatiglans: 577 reads 232290fd735f846c185ffc68ecf704c9 · Desulfatiglans: 576 reads f1f0bca30eb7a7e7a9ce5d9e96ae63fe: 573 reads 77303cf05f9596177dada728be77637a · uncultured: 570 reads 97a8b2996b76dc01da559f1b5cfa2c89 · WCHB1-81: 566 reads ba693fe72fda0a05194a597af0d0574c · SEEP-SRB1: 556 reads fe63a992371b5496803f2f8b9e6a952c · Desulfatiglans: 553 reads 74e1b7ce419166a68fb7ba944282308a · Bacteroidetes_vadinHA17: 552 reads 0b1b9f3a5e7af71093a7af4286385ec2 · Dinghuibacter: 533 reads 821d1c1ece9e27fd6b9cc5c81270abd8 · uncultured: 528 reads 2ae0f3ba1560c93c7b2c39ed3a5471cf · MSBL8: 526 reads 47e2e5639d5ad8784e03f91f83a3467a · uncultured: 516 reads ad65587fa6586798bff5d0483bd68ec9 · Pseudomonas: 511 reads c9c3acdae3d383c1a4a33117d02d2364 · uncultured: 508 reads 52aa6306b06389cc392d6dc5a4229d45 · Methyloparacoccus: 507 reads 366b5b2ad7007d149f6c77faea377aee · Lentimicrobiaceae: 489 reads 642693ca97ae00b4cf7d00e7e2e1fb96 · MSBL8: 481 reads 30ae942261cf0f0559bbc7f3702b12a4 · Sva0485: 479 reads d0553842ab280d480008eb8de83b50b6 · Acinetobacter: 465 reads 75b8117af957a2cdbe6b58d47eff777c · uncultured: 439 reads aa9bc70abec21413457306ae7ca1aeac · Marinimicrobia_: 438 reads 7e65eda07a717f9042857cf47ec77c79: 416 reads 6d0c808297ed3b96f997b4c40b2cb4e8: 393 reads 709a5dd07056d406411ff10268ec1366 · uncultured: 377 reads bf0ade02fe5f38b6aac880af073b3a00 · Rhodoferax: 377 reads 17a69395a0c251186a977ca1735bab6a · Chlorobaculum: 367 reads 1f35042de008372e190ea3c5424d7bff · MSBL8: 362 reads 766676f11571e03d8caa0964877dc66e · Lentimicrobiaceae: 362 reads 700082993699317cdeb595447d24c633 · ST-12K33: 358 reads 197ca4960d2aa8426add1c098df94558 · Thermoflexus: 356 reads df9f290be0fe2f4a93ee6fee0664d111 · SEEP-SRB1: 355 reads 72ca61ce5d2d02641ef195c2b325fc9c · Pelolinea: 348 reads 795b735bfd7f8d9f167c037a52934cc9 · Bacteroidetes_vadinHA17: 338 reads ec335443baac1a3d2626d3be8c2d4f8f · uncultured: 336 reads dc14f5fad895af7cabffdfaeaa99b56b · Sporichthyaceae: 333 reads 3154a455808a0d7c79782694f9bbbeba · Poribacteria: 326 reads ac171f8e42c7d3e31b2985249ea7deaa · Bacteroides: 312 reads ade080e6ae6a97f526d11447710212a5 · LD29: 312 reads c77bbdaef80416033991e8dc1ab5c103: 311 reads d06c18f3ae0ae21dbad05029d0ae44cd: 308 reads 3b251a3af17a0e994f3f26d071af397e · LD29: 307 reads 092040279987281d229a0413f153a834 · hgcI_clade: 301 reads 06915f4c44e365169c3c78941a7fb034 · uncultured: 299 reads d06c91496535c68d9d142ae57fca0911: 299 reads 77c2b54759c6f20537e9224c3e4e8079 · Candidatus_Omnitrophus: 298 reads 26385fb9522a33607a4b48e0a947bb4c · GIF9: 295 reads 04728f6f97a256d6b1e5f3cd5775ad09 · MWH-UniP1_aquatic_group: 293 reads a49f0d332287851ca0f120e8e44e3039 · WCHB1-41: 292 reads 5a7c01dff76e077dc1a22c0e88171e30 · Lentimicrobiaceae: 290 reads 5d50a9433cba4c2997b92d3e275a398b · LD29: 290 reads 9293dd8b9bf1d4750795c8c681fefe39 · uncultured: 290 reads 51f7512a69680a2de1e8cac1dd61201c · WCHB1-81: 289 reads 951180855e8faa035d4819cf7ca7eeb1 · Rhodoferax: 285 reads a60738daa7a70fe40e4b3aecca290f01 · uncultured: 285 reads 0c96ae5f9099f97f49f913aae9425e74 · Lentimicrobiaceae: 283 reads 3f0a6264afd4fa2427c175529cffdd25 · Clade_III: 283 reads 9ffcae9e6bde4704d6f820a1c4787a66: 283 reads 5ac570ac5b27a69c25612221fc35f4c5 · Sulfurimonas: 282 reads 8cd002cc48f48c72006840e97b06ba45 · hgcI_clade: 280 reads d84cd22d2c4951deb17c7d0a41b36a89 · Methylotenera: 279 reads f9674abe6d774cc8d51791c02cb60610 · CL500-29_marine_group: 275 reads a7bcf41b74854a12c953103a6fff6f41: 273 reads a16a9ff4c63ae999ab27f1866c6eabe3 · Pedobacter: 272 reads be84106d596c6c9d79d42fbe0e1db997 · MSBL8: 271 reads 1256ef10a1d948eb264bab9e2fa6c37e · Pelolinea: 268 reads 5366287dceb100d4a703807084a69c5f · uncultured: 265 reads b083829692d21ea71e35283f0527bc02 · SBR1031: 264 reads 198e4246f3677780dfae421432794d7b: 263 reads 77b5bd06c3d8009cc72c9af1fefe9550 · uncultured: 263 reads d6e90e2ee2b5a56f16a621681662c7f8 · GKS98_freshwater_group: 259 reads c1b15a65484fa13306cbff83fd1dc437 · Fluviicola: 258 reads b4f1fc789ec0db5992e6aeddcbe9325f · Macellibacteroides: 257 reads edc8afa2df111ab3014b16b38aa50490 · Candidatus_Staskawiczbacteria: 257 reads 73064622171302afd1949bb32257ac80 · uncultured: 254 reads 8bc5bb552a89c8c44b4e9437e6c13edc: 254 reads 2de5431f0d107821b5f2b416e9579141: 250 reads ec577d2cfdfc9d36d77bcd636fe3541e · PeM15: 250 reads 648e7728e205bbc2b00fa0d6044c49ea · SB-5: 249 reads e23bbb5e9ef8b4374e46e36918cfa138 · Candidatus_Omnitrophus: 249 reads 62515ab63a6dd356f67d6571f6564fa2 · hgcI_clade: 246 reads 2a0acbe2280f4003f257af8d5f5cd924: 244 reads 91d3bb592247d3d737d0b1da29fc92ef · Cyanobium_PCC-6307: 240 reads dcf32e826f01b1a22c6f3045e27b67d7 · Chloroplast: 240 reads e1e2a3a27f9eafde41ef86ea6ac8ed10 · WCHB1-81: 239 reads efddb11bc8da621a7cb0091ba6e1dce0 · SCGC_AAA011-D5: 239 reads 4ed5c5f0c1f6b3d7bf0fbfd76d22470f · Prosthecochloris: 238 reads 4a830128d86053264324ba7e93e3de4b · Spirochaeta_2: 237 reads b4d9c64633a17d72eec1ad2825722e74 · Sulfurimonas: 237 reads 5158b9731ee7d038e303bf8fc5e1e8a9 · Lentimicrobiaceae: 235 reads d313799e039b605640b705cd25372c32 · Acholeplasma: 235 reads 1ff6e69acd7c7979ef2ed21e89633bf0 · uncultured: 234 reads 5a93c6d3cd252ef145d8ff61073697ad: 234 reads f0b62924a31549fc58c1ebdcedc12185 · Desulfocapsa: 233 reads 90cce6dd94d4ec07de5db4774b50b5f1: 231 reads 009f26edf89984df7627369e16dc4145 · Sva0485: 230 reads 6c8e7a08a09b51e8d3273f9e34d02966: 229 reads fae51f02acb76fa250e23caa4b9865c8 · WCHB1-81: 224 reads 6d8dca305294fb7a8414f4f481c82792: 223 reads c3da6288b20b05bb307fa2c875e227b4 · Cyanobium_PCC-6307: 223 reads c9437f113cf96330de74b96c71cb363e: 222 reads db224b130ab2cf9a37492484c98dfd31 · Desulfocapsa: 222 reads 2251989b82909941453ca239ad5e6230 · Candidatus_Kerfeldbacteria: 221 reads 0e9e549f98e14cca23af9d5913e1cbf3 · Spirochaeta_2: 219 reads 65fbd094f9c59b61475354ee49eefc2b · Candidatus_Anammoximicrobium: 218 reads d0c09b749c245f1b0a94f50d7e94b9a6 · Lentimicrobiaceae: 217 reads 2a7454497b3ee077290698cd1d7b9f3a · NKB15: 216 reads 35c5df5992e3b75756c3dcb001cc1c61 · SCGC_AAA011-D5: 216 reads 86c7ba6cfca306f72001e05f19771ec6: 216 reads adc4fcbc8ca21ae9ee74e41131b70733 · Candidatus_Uhrbacteria: 216 reads 885fbbe9796a86936117195ea6ac2120 · LD29: 215 reads 92abe756f71eeb69ed2724997d2bbd7c · Pelolinea: 215 reads c5e4b40fdd048b9646c2690fd5211f17 · Desulfatiglans: 215 reads 19a6b565db84cd8e1bc56a92d803ec93: 213 reads 21da4941548906f3435f56d93e4a88ea · LD29: 211 reads f25c3dc1541fd61c3f2b43f70ff52c80 · Hydrogenedensaceae: 211 reads 79ea1e667043efd351a72f8f147aa6cd: 210 reads b83ab5fa3ebf826393ff9ed2e51d85f8 · WCHB1-81: 210 reads 046cad23d7685c79f6a614f15821f25d · Pelolinea: 209 reads 85681bf68a5eb02d8861d941b5d6bf35 · Candidatus_Omnitrophus: 208 reads d28fa35c32094092a8a094d45ce6d706 · Candidatus_Falkowbacteria: 208 reads f4d9f91ba971c21d81f772ee9e35bce6 · GIF9: 206 reads 5bc6a06dd557bc2fa053e2f18678242c · Pirellulaceae: 204 reads 014c711db4b9ac95df209ca8c2f4044c · Draconibacterium: 203 reads 030d0ad6be3d830a6f1362663cae6ef5 · SG8-4: 203 reads d3cf8b1db0d5781aaca22987c80056ba · NS11-12_marine_group: 203 reads d5b2d3e08f0e8aba1f338ce7a439a593 · Candidatus_Methylopumilus: 203 reads ae500c976d938da2726d4f9f6eef4f3d · Thermoflexus: 202 reads ec6d5f6f622dd05ed85b507ecb6e4ebb: 201 reads 1cabf09e7eca564b9dc6e13a81afba6a · Bacteroidetes_BD2-2: 200 reads 7e9ecd0be64a9b5cd9b00f972d733e62 · uncultured: 200 reads b06830bafc6f460cd5a8ef4468f37883 · Lentimicrobiaceae: 199 reads d70912412d2403cfe97bbc4db8fc3152 · Candidatus_Limnoluna: 199 reads bafa3a23adc32b1c130ccf6e7be3f078 · Halochromatium: 198 reads c05ece6b5fc055761dcb68d9f408f8d4: 198 reads cf38b8b61a7e0e3036791f5ac9649dac · Candidatus_Aquirestis: 198 reads df2c33034068abc570f4da76198b4145 · WCHB1-41: 198 reads 3f93ce776cd8be5224d3ed9f5f58a168: 197 reads 4f5bb76a9bcdae8ec1a694746e86f01c · SC103: 197 reads f95267490a3eba851010d9439b140dcd · Dinghuibacter: 197 reads 00a66d5520eeaa30124b2344e933cdc1 · WCHB1-41: 196 reads 74f8b65126d24c2000af69328e063a0f · MWH-UniP1_aquatic_group: 193 reads 79d8b5c8b8d0fb85b38ec9b62d4f3e22 · Flavobacterium: 192 reads ac95aa09c2ef5f5c2e0bf379f118f778 · Spirochaeta_2: 191 reads d898851d67291706482f22e27559a403 · Flavobacterium: 191 reads 7b19642e7c5adab97eb03ca27143d694 · uncultured: 190 reads 92ce46a4a260a36bf2bdd959ab8c2f8d · uncultured: 189 reads dc443b1f652a46c24dd94f87a7ab9d57 · Candidatus_Limnoluna: 189 reads de37f3a151495bf1af6f0e9360390c51 · Berkelbacteria: 189 reads 60ce7241a64a807e9efcbd5143ce44fb: 188 reads 6cf9dd76693c577aa0890ce600c12f18 · SCGC_AAA011-D5: 187 reads ca82c5ea316cdefd68a4e86ec394981f · Bacteroides: 187 reads 1c4d773458950bf46cecc22e60613f0a: 186 reads cdf4ca70752782fd4fa6f04f6fc19fa1 · WCHB1-81: 186 reads 246d6489e1ed227d893e0ae5e0991cbb · Cyanobium_PCC-6307: 185 reads 6f144485bafc2b6d0cdfff71c7c3e2c6 · uncultured: 183 reads 8473b9fa4e70f28985611bd8a35ce1fd · Bacteroidetes_vadinHA17: 183 reads 04b6a769fd03ec853220cec4770ca9d8 · LD29: 181 reads 0ccab812dcf084297004d69f3b4ac108 · Sulfurovum: 181 reads rank reads

1,500 ranked features, top 200 shown. A steep drop means a few taxa carry most of the reads.

Per-sample reads

12 samples
min
11,265
median
19,790
max
33,544

Missing or wrong data?

Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.

Contribute to PRJDB12980

Validated automatically where it can be, reviewed by a person where it cannot.

Downloads

6 files · sha256 in manifest

Files are served from https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB12980-20260912/ once hosting is wired. Until then the links point at a placeholder base URL.