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SAMEA1712424
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4-V5
- present
- 0.1
derived from this sample's metadata and per-run QC
2,232
Reads
125
Observed features
4.505
Shannon
0.933
Evenness
125
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198656
Per-run QC
- 16S identity
- 93.1%
- Q30
- 66.8%
- Region
- V4-V5
- Read length
- 352 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 37.1%
- Actinomycetota 16.4%
- Gemmatimonadota 15.9%
- Acidobacteriota 10.5%
- Bacteroidota 6.0%
- Bacillota 5.6%
- Verrucomicrobiota 2.2%
- everything else 6.3%
- Gammaproteobacteria 19.5%
- Alphaproteobacteria 17.6%
- Thermoleophilia 11.6%
- Gemmatimonadia 9.5%
- Bacteroidia 6.0%
- Longimicrobiia 5.1%
- Bacilli 5.1%
- everything else 25.6%
- Burkholderiales 15.9%
- Sphingomonadales 10.3%
- Gemmatimonadales 9.5%
- Solirubrobacterales 6.6%
- Longimicrobiales 5.1%
- Gaiellales 5.0%
- Caulobacterales 4.2%
- everything else 43.4%
- Incertae Sedis 12.1%
- Sphingomonadaceae 10.3%
- Gemmatimonadaceae 9.5%
- Oxalobacteraceae 9.0%
- Longimicrobiaceae 5.1%
- Comamonadaceae 4.6%
- Caulobacteraceae 4.2%
- everything else 45.1%
- Incertae Sedis 39.2%
- Sphingomonas 6.1%
- Noviherbaspirillum 5.0%
- Massilia 3.2%
- Lysobacter 3.1%
- Flavisolibacter 3.1%
- Caenimonas 3.1%
- everything else 37.2%
- uncultured bacterium 64.6%
- uncultured Gemmatimonadetes bacterium 4.0%
- uncultured beta proteobacterium 3.5%
- Bacillus sp. (in: Bacteria) 3.3%
- uncultured actinobacterium 2.5%
- uncultured Sphingomonadaceae bacterium 2.4%
- Lysobacter sp. Z2-YC6852 1.9%
- everything else 17.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 88% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 84% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 79% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 76% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 75% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.