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SAMEA1712430
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4
- present
- 0.1
derived from this sample's metadata and per-run QC
1,507
Reads
81
Observed features
4.029
Shannon
0.917
Evenness
81
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198676
Per-run QC
- 16S identity
- 85.5%
- Q30
- 62.8%
- Region
- V4
- Read length
- 367 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 39.7%
- Actinomycetota 23.2%
- Gemmatimonadota 14.3%
- Acidobacteriota 7.8%
- Bacteroidota 5.2%
- Chloroflexota 3.9%
- Verrucomicrobiota 2.1%
- everything else 3.9%
- Gammaproteobacteria 22.6%
- Alphaproteobacteria 17.1%
- Thermoleophilia 14.4%
- Gemmatimonadia 9.8%
- Bacteroidia 5.2%
- Actinobacteria 4.6%
- Vicinamibacteria 3.9%
- everything else 22.4%
- Burkholderiales 18.8%
- Sphingomonadales 10.8%
- Gemmatimonadales 9.8%
- Solirubrobacterales 7.6%
- Gaiellales 6.8%
- Incertae Sedis 4.5%
- Caulobacterales 3.9%
- everything else 37.9%
- Incertae Sedis 19.4%
- Oxalobacteraceae 15.2%
- Sphingomonadaceae 10.8%
- Gemmatimonadaceae 9.8%
- 67-14 5.7%
- Caulobacteraceae 3.9%
- Longimicrobiaceae 3.3%
- everything else 32.0%
- Incertae Sedis 42.9%
- Massilia 12.4%
- Sphingomonas 7.5%
- Lysobacter 3.1%
- Phenylobacterium 3.0%
- Longimicrobium 3.0%
- Janthinobacterium 2.8%
- everything else 25.2%
- uncultured bacterium 70.6%
- uncultured Gemmatimonas sp. 4.0%
- Massilia sp. 3.6%
- Lysobacter sp. Z2-YC6852 3.1%
- uncultured Phenylobacterium sp. 3.0%
- Janthinobacterium sp. 4cultural_33 2.8%
- uncultured beta proteobacterium 2.4%
- everything else 10.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 82% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 78% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 77% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 75% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 74% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.