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SAMN33785635
MIGS Cultured Bacterial/Archaeal sample from Microbacterium sp. 37.3
- 1 run(s)
- Illumina HiSeq 2500
- V4-V5
- present
derived from this sample's metadata and per-run QC
6,537
Reads
24
Observed features
3.022
Shannon
0.951
Evenness
24
Chao1
Where and when
- Collected
- 2021-07-28
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 43.04181, -70.71524
- Platforms
- Illumina HiSeq 2500
Runs
SRR23886409
Per-run QC
- 16S identity
- 99.0%
- Q30
- 91.2%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Actinomycetota 99.7%
- Pseudomonadota 0.3%
- Actinobacteria 99.7%
- Gammaproteobacteria 0.2%
- Alphaproteobacteria 0.0%
- Micrococcales 99.7%
- Burkholderiales 0.2%
- Acetobacterales 0.0%
- Microbacteriaceae 99.7%
- Oxalobacteraceae 0.2%
- Alcaligenaceae 0.1%
- Acetobacteraceae 0.0%
- Microbacterium 99.7%
- Massilia 0.2%
- Achromobacter 0.1%
- Roseomonas 0.0%
- Microbacterium phyllosphaerae 99.7%
- uncultured Massilia sp. 0.2%
- Azospirillum brasilense 0.1%
- Roseomonas gilardii 0.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadataNearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA945462-20260926/.