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SAMEA1712410
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4
- present
- 0.1
derived from this sample's metadata and per-run QC
0
Reads
0
Observed features
n/a
Shannon
n/a
Evenness
n/a
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198662
Per-run QC
- 16S identity
- 92.3%
- Q30
- 67.3%
- Region
- V4
- Read length
- 360 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- everything else 100.0%
- everything else 100.0%
- everything else 100.0%
- everything else 100.0%
- everything else 100.0%
- everything else 100.0%
- everything else 100.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.