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SAMEA1712401
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4
- present
- 0.1
derived from this sample's metadata and per-run QC
1,243
Reads
79
Observed features
4.003
Shannon
0.916
Evenness
79
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198659
Per-run QC
- 16S identity
- 71.2%
- Q30
- 63.4%
- Region
- V4
- Read length
- 354 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Actinomycetota 33.4%
- Pseudomonadota 21.1%
- Bacteroidota 18.8%
- Bacillota 11.1%
- Chloroflexota 7.3%
- Gemmatimonadota 3.8%
- Acidobacteriota 1.9%
- everything else 2.6%
- Bacteroidia 18.8%
- Actinobacteria 18.7%
- Alphaproteobacteria 15.1%
- Thermoleophilia 9.7%
- Clostridia 6.4%
- Gammaproteobacteria 5.9%
- Chloroflexia 4.3%
- everything else 21.0%
- Chitinophagales 11.3%
- Hyphomicrobiales 7.9%
- Propionibacteriales 7.6%
- Solirubrobacterales 6.5%
- Clostridiales 5.9%
- Frankiales 5.5%
- Rubrobacterales 4.0%
- everything else 51.3%
- Chitinophagaceae 11.3%
- Beijerinckiaceae 7.9%
- Incertae Sedis 6.7%
- Nocardioidaceae 6.2%
- Geodermatophilaceae 4.6%
- 67-14 4.1%
- Rubrobacteriaceae 4.0%
- everything else 55.2%
- Incertae Sedis 24.0%
- Flavisolibacter 7.2%
- Microvirga 6.7%
- Nocardioides 6.2%
- Rubrobacter 4.0%
- Lysinibacillus 3.4%
- Clostridium 3.3%
- everything else 45.3%
- uncultured bacterium 64.3%
- Marmoricola sp. 6.2%
- uncultured Chloroflexi bacterium 4.3%
- Bacillus sp. CA-11 3.4%
- uncultured Xylophilus sp. 3.3%
- Agrococcus sp. SBT351 2.1%
- uncultured Blastococcus sp. 1.8%
- everything else 14.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 65% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 54% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.