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SAMEA1712405
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4-V5
- present
- 0.1
derived from this sample's metadata and per-run QC
6,700
Reads
215
Observed features
4.804
Shannon
0.894
Evenness
215
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198655
Per-run QC
- 16S identity
- 93.6%
- Q30
- 66.9%
- Region
- V4-V5
- Read length
- 344 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1834 · Microvirga 242 (3.6%)
- ASV_1945 · Daejeonella 220 (3.3%)
- ASV_2056 · Pontibacter 216 (3.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 35.7%
- Actinomycetota 22.3%
- Bacteroidota 21.3%
- Bacillota 11.8%
- Gemmatimonadota 2.3%
- Myxococcota 2.1%
- Chloroflexota 2.0%
- everything else 2.4%
- Gammaproteobacteria 23.3%
- Bacteroidia 21.3%
- Actinobacteria 16.9%
- Alphaproteobacteria 12.4%
- Bacilli 11.5%
- Thermoleophilia 3.3%
- Myxococcia 1.8%
- everything else 9.4%
- Burkholderiales 18.1%
- Bacillales 10.4%
- Sphingobacteriales 8.0%
- Cytophagales 6.6%
- Chitinophagales 6.6%
- Hyphomicrobiales 6.3%
- Frankiales 5.5%
- everything else 38.5%
- Oxalobacteraceae 14.3%
- Bacillaceae 8.9%
- Sphingobacteriaceae 8.0%
- Chitinophagaceae 6.6%
- Hymenobacteraceae 6.5%
- Beijerinckiaceae 6.0%
- Geodermatophilaceae 5.5%
- everything else 44.1%
- Incertae Sedis 11.2%
- Massilia 7.6%
- Daejeonella 7.6%
- Noviherbaspirillum 6.3%
- Microvirga 5.6%
- Pontibacter 5.4%
- Flavisolibacter 5.1%
- everything else 51.1%
- uncultured bacterium 56.5%
- Bacillus sp. (in: Bacteria) 8.6%
- Pontibacter deserti 4.0%
- Marmoricola sp. 3.0%
- uncultured Blastococcus sp. 2.3%
- Azohydromonas australica DSM 1124 2.3%
- uncultured actinobacterium 1.8%
- everything else 21.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 53% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.