opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN05560353
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
11,540
Reads
204
Observed features
4.278
Shannon
0.804
Evenness
204
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036703
Per-run QC
- 16S identity
- 55.8%
- Q30
- 76.1%
- Region
- V3-V4
- Read length
- 447 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 38.4%
- Bacillota 16.8%
- Bacteroidota 13.0%
- Candidatus Eremiobacterota 9.9%
- Acidobacteriota 8.4%
- Actinomycetota 4.8%
- Chloroflexota 2.5%
- everything else 6.2%
- Gammaproteobacteria 35.0%
- Bacteroidia 13.0%
- Clostridia 11.6%
- Eremiobacteria 9.9%
- Acidobacteriae 5.2%
- Actinobacteria 4.5%
- Desulfitobacteriia 4.5%
- everything else 16.3%
- Burkholderiales 20.8%
- Lysobacterales 12.9%
- Incertae Sedis 12.1%
- Chitinophagales 11.2%
- Clostridiales 10.2%
- Desulfitobacteriales 4.5%
- Terriglobales 4.3%
- everything else 24.1%
- Incertae Sedis 12.9%
- Chitinophagaceae 11.2%
- Clostridiaceae 10.2%
- Comamonadaceae 9.9%
- Rhodanobacteraceae 9.8%
- Alcaligenaceae 6.5%
- Desulfitobacteriaceae 4.5%
- everything else 35.0%
- Incertae Sedis 28.7%
- Clostridium 10.2%
- Rhodanobacter 7.7%
- Nemorincola 6.5%
- Castellaniella 6.3%
- Desulfosporosinus 4.5%
- Rhodoferax 3.8%
- everything else 32.5%
- uncultured bacterium 45.7%
- Clostridium frigidicarnis 7.3%
- Rhodanobacter sp. 5.3%
- uncultured Acidobacteria bacterium 4.7%
- Castellaniella sp. 4.5A2 4.3%
- Thermomonas fusca 3.0%
- Comamonas sp. MPI12 2.4%
- everything else 27.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 71% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 69% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 61% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 61% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 59% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.