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SAMN05560357
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
20,560
Reads
364
Observed features
4.914
Shannon
0.833
Evenness
364
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036693
Per-run QC
- 16S identity
- 56.1%
- Q30
- 76.9%
- Region
- V3-V4
- Read length
- 446 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 50.0%
- Acidobacteriota 10.1%
- Bacillota 9.6%
- Chloroflexota 9.0%
- Bacteroidota 6.6%
- Actinomycetota 5.1%
- Myxococcota 3.0%
- everything else 6.4%
- Gammaproteobacteria 34.8%
- Alphaproteobacteria 15.2%
- KD4-96 7.2%
- Bacteroidia 6.6%
- Acidobacteriae 4.6%
- Actinobacteria 4.4%
- Clostridia 4.4%
- everything else 22.7%
- Burkholderiales 15.7%
- Lysobacterales 14.4%
- Incertae Sedis 9.5%
- Hyphomicrobiales 8.5%
- Holophagales 4.0%
- Clostridiales 3.9%
- Desulfitobacteriales 3.8%
- everything else 40.2%
- Rhodanobacteraceae 13.8%
- Incertae Sedis 12.0%
- Comamonadaceae 4.0%
- Holophagaceae 4.0%
- Clostridiaceae 3.9%
- Desulfitobacteriaceae 3.8%
- Sphingomonadaceae 3.8%
- everything else 54.9%
- Incertae Sedis 28.1%
- Rhodanobacter 8.2%
- Dyella 5.1%
- Clostridium 3.9%
- Desulfosporosinus 3.8%
- Sphingomonas 3.3%
- Microvirgula 2.1%
- everything else 45.6%
- uncultured bacterium 48.4%
- Rhodanobacter sp. 7.5%
- Dyella sp. 5.1%
- uncultured Alphaproteobacteria bacterium 4.4%
- Clostridium frigidicarnis 2.5%
- uncultured Firmicutes bacterium 2.1%
- Microvirgula aerodenitrificans 2.1%
- everything else 27.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 73% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 71% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 68% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 58% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 54% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.