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SAMN05560349
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
10,032
Reads
156
Observed features
3.561
Shannon
0.705
Evenness
156
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036699
Per-run QC
- 16S identity
- 99.5%
- Q30
- 74.8%
- Region
- V3-V4
- Read length
- 445 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 57.4%
- Bacillota 24.7%
- Candidatus Eremiobacterota 5.5%
- Acidobacteriota 4.7%
- Actinomycetota 1.7%
- Bacteroidota 1.5%
- Thermodesulfobacteriota 1.1%
- everything else 3.5%
- Gammaproteobacteria 54.9%
- Clostridia 19.9%
- Eremiobacteria 5.5%
- Alphaproteobacteria 2.5%
- Acidobacteriae 2.5%
- Holophagae 2.2%
- Desulfitobacteriia 1.9%
- everything else 10.7%
- Lysobacterales 36.9%
- Clostridiales 16.9%
- Burkholderiales 13.0%
- Incertae Sedis 6.5%
- Enterobacterales 4.2%
- Holophagales 2.2%
- Terriglobales 2.1%
- everything else 18.3%
- Rhodanobacteraceae 36.9%
- Clostridiaceae 16.7%
- Incertae Sedis 7.4%
- Alcaligenaceae 4.7%
- Comamonadaceae 4.4%
- Enterobacteriaceae 4.2%
- Holophagaceae 2.2%
- everything else 23.6%
- Rhodanobacter 33.4%
- Incertae Sedis 19.3%
- Clostridium 16.7%
- Castellaniella 4.7%
- Citrobacter 2.6%
- Desulfosporosinus 1.9%
- Rugosibacter 1.8%
- everything else 19.7%
- uncultured bacterium 32.4%
- groundwater metagenome 29.4%
- Clostridium frigidicarnis 8.3%
- uncultured soil bacterium 3.6%
- gamma proteobacterium OR-113 3.5%
- uncultured beta proteobacterium 3.5%
- Rhodanobacter sp. 2.4%
- everything else 17.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 61% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 59% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 55% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 50% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.