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SAMN05560354
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
20,294
Reads
103
Observed features
2.938
Shannon
0.634
Evenness
103
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036704
Per-run QC
- 16S identity
- 56.5%
- Q30
- 74.6%
- Region
- V3-V4
- Read length
- 446 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_2244 · Incertae Sedis 5,055 (24.9%)
- ASV_2355 · Paracandidimonas 4,648 (22.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 47.3%
- Candidatus Eremiobacterota 25.9%
- Bacillota 11.4%
- Acidobacteriota 5.5%
- Bacteroidota 5.0%
- Actinomycetota 1.6%
- Spirochaetota 0.9%
- everything else 2.3%
- Gammaproteobacteria 45.3%
- Eremiobacteria 25.9%
- Clostridia 8.0%
- Bacteroidia 5.0%
- Holophagae 3.5%
- Alphaproteobacteria 2.0%
- Acidobacteriae 1.8%
- everything else 8.4%
- Burkholderiales 32.3%
- Incertae Sedis 28.1%
- Salinisphaerales 9.5%
- Clostridiales 6.0%
- Holophagales 3.5%
- Bacteroidales 2.6%
- Enterobacterales 2.3%
- everything else 15.7%
- Incertae Sedis 29.4%
- Alcaligenaceae 22.9%
- Nevskiaceae 9.5%
- Clostridiaceae 6.0%
- Comamonadaceae 5.6%
- Holophagaceae 3.5%
- Rhodocyclaceae 2.3%
- everything else 20.8%
- Incertae Sedis 34.4%
- Paracandidimonas 22.9%
- Fontimonas 9.5%
- Sarcina 4.5%
- Acidovorax 3.4%
- Enterobacter 2.3%
- Acetobacteroides 2.2%
- everything else 20.8%
- uncultured bacterium 46.6%
- Castellaniella sp. BAB-4050 22.9%
- uncultured gamma proteobacterium GR-296.I.104 9.5%
- uncultured Acidovorax sp. 3.4%
- Pantoea agglomerans 2.3%
- Acetobacteroides hydrogenigenes 2.2%
- uncultured Holophaga sp. 2.0%
- everything else 11.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 57% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 50% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.