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SAMN05560350
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
16,788
Reads
62
Observed features
1.82
Shannon
0.441
Evenness
62
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036700
Per-run QC
- 16S identity
- 51.0%
- Q30
- 69.7%
- Region
- V3-V4
- Read length
- 464 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Paracandidimonas 10,509 (62.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 84.4%
- Bacteroidota 5.8%
- Acidobacteriota 4.0%
- Bacillota 3.0%
- Actinomycetota 1.4%
- Chloroflexota 0.4%
- Candidatus Eremiobacterota 0.3%
- everything else 0.7%
- Gammaproteobacteria 82.3%
- Bacteroidia 5.8%
- Holophagae 3.3%
- Clostridia 2.2%
- Alphaproteobacteria 2.1%
- Actinobacteria 1.4%
- Bacilli 0.6%
- everything else 2.3%
- Burkholderiales 73.5%
- Cardiobacteriales 7.2%
- Chitinophagales 5.5%
- Holophagales 3.3%
- Clostridiales 1.8%
- Hyphomicrobiales 1.5%
- Enterobacterales 1.0%
- everything else 6.0%
- Alcaligenaceae 63.3%
- Comamonadaceae 8.1%
- Cardiobacteriaceae 7.2%
- Chitinophagaceae 5.5%
- Holophagaceae 3.3%
- Clostridiaceae 1.8%
- Hydrogenophilaceae 1.2%
- everything else 9.5%
- Paracandidimonas 63.1%
- Incertae Sedis 15.5%
- Acidovorax 7.0%
- Nemorincola 2.6%
- Sarcina 1.3%
- Thiobacillus 1.2%
- Devosia 1.2%
- everything else 8.1%
- Castellaniella sp. BAB-4050 63.1%
- uncultured bacterium 16.0%
- uncultured Acidovorax sp. 7.0%
- uncultured Holophaga sp. 3.3%
- uncultured Chitinophaga sp. 2.5%
- uncultured Thiobacillus sp. 1.2%
- Escherichia coli 1.0%
- everything else 5.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 84% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 72% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 50% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 50% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.