opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN05560351
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
11,036
Reads
63
Observed features
2.706
Shannon
0.653
Evenness
63
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036701
Per-run QC
- 16S identity
- 99.7%
- Q30
- 73.1%
- Region
- V3-V4
- Read length
- 459 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 74.7%
- Bacteroidota 13.5%
- Actinomycetota 3.6%
- Acidobacteriota 3.2%
- Bacillota 1.2%
- Chloroflexota 1.0%
- Campylobacterota 0.6%
- everything else 2.3%
- Gammaproteobacteria 69.8%
- Bacteroidia 13.5%
- Alphaproteobacteria 4.8%
- Actinobacteria 3.6%
- Holophagae 1.3%
- Acidobacteriae 0.9%
- Bacilli 0.8%
- everything else 5.3%
- Burkholderiales 53.2%
- Lysobacterales 15.8%
- Chitinophagales 12.7%
- Frankiales 3.2%
- Sphingomonadales 1.9%
- Hyphomicrobiales 1.8%
- Holophagales 1.3%
- everything else 10.1%
- Comamonadaceae 26.6%
- Alcaligenaceae 23.0%
- Rhodanobacteraceae 13.5%
- Chitinophagaceae 12.7%
- Incertae Sedis 4.4%
- Rhodocyclaceae 3.0%
- Lysobacteraceae 2.3%
- everything else 14.5%
- Acidovorax 25.8%
- Paracandidimonas 22.8%
- Incertae Sedis 21.4%
- Rhodanobacter 13.5%
- Thermomonas 2.3%
- Thauera 1.2%
- Novosphingobium 1.0%
- everything else 12.0%
- uncultured Acidovorax sp. 25.8%
- Castellaniella sp. BAB-4050 22.8%
- Rhodanobacter sp. LQ-2 13.5%
- uncultured bacterium 12.6%
- uncultured Chitinophaga sp. 11.1%
- Thermomonas sp. lyso-lm521 2.3%
- metagenome 1.6%
- everything else 10.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 57% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 50% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.