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SAMN05560356
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
5,179
Reads
105
Observed features
3.913
Shannon
0.841
Evenness
105
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036692
Per-run QC
- 16S identity
- 52.6%
- Q30
- 76.0%
- Region
- V3-V4
- Read length
- 451 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 67.6%
- Bacteroidota 12.9%
- Ignavibacteriota 5.7%
- Acidobacteriota 5.4%
- Actinomycetota 3.2%
- Chloroflexota 2.4%
- Bacillota 0.8%
- everything else 2.0%
- Gammaproteobacteria 53.3%
- Alphaproteobacteria 14.3%
- Bacteroidia 12.9%
- Ignavibacteria 5.7%
- Actinobacteria 3.2%
- Holophagae 2.3%
- Acidobacteriae 2.3%
- everything else 6.0%
- Burkholderiales 37.4%
- Lysobacterales 13.1%
- Chitinophagales 11.5%
- Hyphomicrobiales 7.3%
- Ignavibacteriales 5.7%
- Sphingomonadales 3.7%
- Frankiales 2.4%
- everything else 19.0%
- Comamonadaceae 18.8%
- Alcaligenaceae 12.0%
- Chitinophagaceae 11.5%
- Rhodanobacteraceae 10.9%
- Ignavibacteriaceae 4.4%
- Sphingomonadaceae 3.7%
- Incertae Sedis 3.2%
- everything else 35.4%
- Incertae Sedis 24.8%
- Castellaniella 12.0%
- Alicycliphilus 9.2%
- Rhodanobacter 8.4%
- Comamonas 5.0%
- Ignavibacterium 4.4%
- Devosia 2.9%
- everything else 33.2%
- uncultured bacterium 50.7%
- Castellaniella sp. 4.5A2 6.3%
- Comamonas sp. MPI12 5.0%
- Rhodanobacter sp. 4.8%
- uncultured Rhodanobacter sp. 3.5%
- uncultured gamma proteobacterium 2.6%
- Sphingomonas sp. V3M19 2.5%
- everything else 24.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 70% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 59% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 58% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 54% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 51% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.