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SAMN05560359
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
27,759
Reads
331
Observed features
4.252
Shannon
0.733
Evenness
331
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036695
Per-run QC
- 16S identity
- 55.1%
- Q30
- 76.4%
- Region
- V3-V4
- Read length
- 463 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 61.4%
- Pseudomonadota 17.9%
- Bacteroidota 4.8%
- Ignavibacteriota 4.6%
- Nitrospirota 1.7%
- Chloroflexota 1.4%
- Verrucomicrobiota 1.4%
- everything else 6.8%
- Holophagae 49.2%
- Gammaproteobacteria 12.0%
- Thermoanaerobaculia 9.8%
- Alphaproteobacteria 5.9%
- Bacteroidia 4.8%
- Ignavibacteria 4.6%
- Acidobacteriae 2.4%
- everything else 11.3%
- Holophagales 49.1%
- Thermoanaerobaculales 9.8%
- Burkholderiales 7.0%
- Ignavibacteriales 4.6%
- Chitinophagales 3.7%
- Incertae Sedis 3.2%
- Lysobacterales 2.3%
- everything else 20.3%
- Holophagaceae 49.1%
- Thermoanaerobaculaceae 9.8%
- Incertae Sedis 6.5%
- Chitinophagaceae 3.7%
- Rhodanobacteraceae 2.3%
- Ignavibacteriaceae 2.2%
- Rhodocyclaceae 1.7%
- everything else 24.7%
- Incertae Sedis 62.8%
- Thermoanaerobaculum 9.6%
- Ignavibacterium 2.2%
- Rhodanobacter 2.1%
- Geothrix 1.9%
- Sediminibacterium 1.3%
- Rhizomicrobium 1.2%
- everything else 18.8%
- uncultured bacterium 81.3%
- uncultured Chlorobi bacterium 2.2%
- metagenome 1.8%
- uncultured Acidobacterium sp. 1.6%
- Rhodanobacter sp. 1.5%
- uncultured soil bacterium 1.0%
- uncultured Holophaga sp. 0.9%
- everything else 9.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 62% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 53% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.