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SAMN06704758
Cd_contaminated_paddy_soil_1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
22,839
Reads
660
Observed features
5.903
Shannon
0.909
Evenness
660
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.22, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435155
Per-run QC
- 16S identity
- 96.5%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 96.0%
- Archaea 4.0%
- Chloroflexota 31.6%
- Pseudomonadota 24.9%
- Acidobacteriota 11.3%
- Thermodesulfobacteriota 5.4%
- Bacteroidota 3.2%
- Actinomycetota 2.6%
- Bacillota 2.5%
- everything else 18.6%
- Anaerolineae 26.1%
- Gammaproteobacteria 22.1%
- KD4-96 4.3%
- Aminicenantia 3.6%
- Bacteroidia 3.2%
- Alphaproteobacteria 2.8%
- Thermoanaerobaculia 2.4%
- everything else 35.5%
- Anaerolineales 20.2%
- Burkholderiales 16.9%
- Incertae Sedis 13.6%
- Aminicenantales 3.6%
- Aggregatilineales 2.5%
- Thermoanaerobaculales 2.4%
- Pseudomonadales 2.3%
- everything else 38.5%
- Incertae Sedis 23.2%
- Anaerolineaceae 20.2%
- Hydrogenophilaceae 7.8%
- Gallionellaceae 3.8%
- Aminicenantaceae 3.6%
- Thermoanaerobaculaceae 2.4%
- Desulfobaccaceae 2.3%
- everything else 36.7%
- Incertae Sedis 45.2%
- RBG-16-58-14 6.9%
- Thiobacillus 3.8%
- Aminicenans 3.6%
- Desulfobacca 2.3%
- Gallionella 1.9%
- Leptolinea 1.8%
- everything else 34.6%
- uncultured bacterium 63.6%
- uncultured Chloroflexi bacterium 6.8%
- uncultured archaeon 3.8%
- uncultured prokaryote 3.1%
- uncultured soil bacterium 1.9%
- uncultured Acidobacteria bacterium 1.6%
- uncultured delta proteobacterium 1.3%
- everything else 17.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.