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SAMN06704759
Cd_contaminated_paddy_soil_2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
12,901
Reads
481
Observed features
5.591
Shannon
0.905
Evenness
481
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.23, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435154
Per-run QC
- 16S identity
- 95.2%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 92.3%
- Archaea 7.7%
- Pseudomonadota 23.6%
- Chloroflexota 22.4%
- Acidobacteriota 16.7%
- Thermodesulfobacteriota 6.7%
- Thermoplasmatota 4.1%
- Bacteroidota 3.2%
- Thermoproteota 2.8%
- everything else 20.5%
- Gammaproteobacteria 21.9%
- Anaerolineae 18.6%
- Aminicenantia 6.0%
- Thermoplasmata 4.1%
- Vicinamibacteria 3.4%
- Incertae Sedis 3.4%
- Bacteroidia 3.2%
- everything else 39.4%
- Burkholderiales 19.8%
- Incertae Sedis 18.2%
- Anaerolineales 14.0%
- Aminicenantales 6.0%
- Vicinamibacterales 3.0%
- Bacteroidales 2.7%
- Aggregatilineales 2.1%
- everything else 34.1%
- Incertae Sedis 28.7%
- Anaerolineaceae 14.0%
- Hydrogenophilaceae 11.7%
- Aminicenantaceae 6.0%
- Gallionellaceae 4.0%
- Bacteroidetes vadinHA17 2.2%
- Thermoanaerobaculaceae 1.9%
- everything else 31.4%
- Incertae Sedis 49.1%
- Aminicenans 6.0%
- Thiobacillus 5.9%
- RBG-16-58-14 5.8%
- Marine Benthic Group D and DHVEG-1 3.0%
- Gallionella 2.5%
- Desulfobacca 1.9%
- everything else 25.6%
- uncultured bacterium 58.2%
- uncultured archaeon 6.2%
- uncultured prokaryote 6.1%
- uncultured Chloroflexi bacterium 4.8%
- uncultured Acidobacteria bacterium 3.6%
- uncultured beta proteobacterium 3.0%
- uncultured soil bacterium 1.9%
- everything else 16.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.