opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704763
Cd_contaminated_paddy_soil_6
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
24,540
Reads
681
Observed features
5.866
Shannon
0.899
Evenness
681
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.27, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435150
Per-run QC
- 16S identity
- 96.2%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.4%
- Archaea 5.6%
- Chloroflexota 30.6%
- Pseudomonadota 23.7%
- Acidobacteriota 13.0%
- Thermodesulfobacteriota 5.3%
- Planctomycetota 3.4%
- Thermoproteota 3.4%
- Actinomycetota 1.9%
- everything else 18.8%
- Anaerolineae 24.1%
- Gammaproteobacteria 20.0%
- KD4-96 4.4%
- Aminicenantia 3.7%
- Alphaproteobacteria 3.7%
- Bathyarchaeia 3.2%
- Vicinamibacteria 2.8%
- everything else 38.0%
- Anaerolineales 18.4%
- Burkholderiales 17.3%
- Incertae Sedis 15.9%
- Aminicenantales 3.7%
- Aggregatilineales 2.9%
- Vicinamibacterales 2.3%
- Desulfobaccales 2.2%
- everything else 37.3%
- Incertae Sedis 28.1%
- Anaerolineaceae 18.4%
- Hydrogenophilaceae 6.9%
- Gallionellaceae 5.9%
- Aminicenantaceae 3.7%
- Desulfobaccaceae 2.2%
- Thermoanaerobaculaceae 2.2%
- everything else 32.6%
- Incertae Sedis 47.6%
- RBG-16-58-14 6.7%
- Thiobacillus 4.7%
- Aminicenans 3.7%
- Gallionella 3.7%
- Desulfobacca 2.2%
- Sideroxydans 2.1%
- everything else 29.2%
- uncultured bacterium 61.6%
- uncultured Chloroflexi bacterium 6.8%
- uncultured archaeon 5.2%
- uncultured beta proteobacterium 4.3%
- uncultured prokaryote 3.1%
- uncultured Acidobacteria bacterium 2.0%
- uncultured soil bacterium 2.0%
- everything else 14.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.