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SAMN06704761
Cd_contaminated_paddy_soil_4
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
30,964
Reads
724
Observed features
5.842
Shannon
0.887
Evenness
724
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.25, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435152
Per-run QC
- 16S identity
- 96.7%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.8%
- Archaea 5.1%
- Chloroflexota 40.6%
- Pseudomonadota 14.9%
- Acidobacteriota 13.0%
- Thermodesulfobacteriota 5.5%
- Thermoplasmatota 2.8%
- Planctomycetota 2.3%
- Bacteroidota 2.0%
- everything else 19.1%
- Anaerolineae 36.0%
- Gammaproteobacteria 13.3%
- Aminicenantia 4.0%
- KD4-96 3.6%
- Incertae Sedis 3.1%
- Thermoplasmata 2.8%
- Thermoanaerobaculia 2.5%
- everything else 34.7%
- Anaerolineales 28.5%
- Incertae Sedis 14.7%
- Burkholderiales 11.6%
- Aggregatilineales 4.0%
- Aminicenantales 4.0%
- Thermoanaerobaculales 2.5%
- RBG-13-54-9 2.3%
- everything else 32.4%
- Anaerolineaceae 28.5%
- Incertae Sedis 25.9%
- Hydrogenophilaceae 6.2%
- Aminicenantaceae 4.0%
- Gallionellaceae 2.9%
- Aggregatilineaceae 2.7%
- Thermoanaerobaculaceae 2.5%
- everything else 27.4%
- Incertae Sedis 49.4%
- RBG-16-58-14 10.9%
- Aminicenans 4.0%
- Leptolinea 3.2%
- Thiobacillus 2.6%
- Aggregatilinea 2.3%
- Anaerolinea 2.2%
- everything else 25.4%
- uncultured bacterium 60.6%
- uncultured Chloroflexi bacterium 10.2%
- uncultured archaeon 4.4%
- uncultured prokaryote 2.9%
- uncultured soil bacterium 2.6%
- uncultured Acidobacteria bacterium 2.1%
- uncultured delta proteobacterium 1.7%
- everything else 15.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 83% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.