opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704770
Cd_contaminated_sediment_3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
25,063
Reads
794
Observed features
6.022
Shannon
0.902
Evenness
794
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.34, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435143
Per-run QC
- 16S identity
- 98.4%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.0%
- Archaea 2.0%
- Chloroflexota 44.8%
- Acidobacteriota 13.3%
- Pseudomonadota 11.5%
- Thermodesulfobacteriota 3.6%
- Planctomycetota 3.5%
- Verrucomicrobiota 3.3%
- Latescibacterota 2.9%
- everything else 17.3%
- Anaerolineae 42.0%
- Gammaproteobacteria 10.8%
- Vicinamibacteria 7.0%
- Incertae Sedis 3.3%
- Aminicenantia 2.7%
- Verrucomicrobiia 2.6%
- KD4-96 2.5%
- everything else 29.1%
- Anaerolineales 36.7%
- Incertae Sedis 13.2%
- Burkholderiales 8.1%
- Vicinamibacterales 3.7%
- Subgroup 17 3.2%
- Aminicenantales 2.7%
- Aggregatilineales 2.5%
- everything else 30.0%
- Anaerolineaceae 36.7%
- Incertae Sedis 27.5%
- Aminicenantaceae 2.7%
- Pedosphaeraceae 2.2%
- Hydrogenophilaceae 2.1%
- Rhodocyclaceae 2.0%
- Pirellulaceae 1.9%
- everything else 24.9%
- Incertae Sedis 58.1%
- RBG-16-58-14 12.5%
- Aminicenans 2.7%
- Sh765B-TzT-35 1.7%
- Anaerolinea 1.6%
- Thiobacillus 1.6%
- Thermus 1.5%
- everything else 20.5%
- uncultured bacterium 64.6%
- uncultured prokaryote 6.8%
- uncultured soil bacterium 5.8%
- uncultured Chloroflexi bacterium 3.5%
- metagenome 2.2%
- uncultured archaeon 1.4%
- uncultured organism 1.0%
- everything else 14.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.