opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704764
Cd_contaminated_paddy_soil_7
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
19,006
Reads
523
Observed features
5.302
Shannon
0.847
Evenness
523
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.28, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435149
Per-run QC
- 16S identity
- 96.2%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 96.7%
- Archaea 3.3%
- Pseudomonadota 33.0%
- Chloroflexota 26.4%
- Acidobacteriota 10.4%
- Thermodesulfobacteriota 4.5%
- Actinomycetota 4.0%
- Bacteroidota 3.5%
- Cyanobacteriota 2.5%
- everything else 15.8%
- Gammaproteobacteria 30.0%
- Anaerolineae 22.1%
- Thermoanaerobaculia 3.9%
- Bacteroidia 3.5%
- Alphaproteobacteria 3.1%
- KD4-96 3.0%
- Actinobacteria 2.8%
- everything else 31.7%
- Burkholderiales 28.1%
- Anaerolineales 18.4%
- Incertae Sedis 8.3%
- Thermoanaerobaculales 3.9%
- Desulfobaccales 2.4%
- Aggregatilineales 2.0%
- Aminicenantales 1.9%
- everything else 35.1%
- Anaerolineaceae 18.4%
- Incertae Sedis 16.1%
- Hydrogenophilaceae 11.9%
- Gallionellaceae 9.6%
- Thermoanaerobaculaceae 3.9%
- Comamonadaceae 3.7%
- Desulfobaccaceae 2.4%
- everything else 34.0%
- Incertae Sedis 42.5%
- Gallionella 8.5%
- RBG-16-58-14 5.8%
- Leptolinea 2.8%
- Desulfobacca 2.4%
- Thiobacillus 2.3%
- Anaerolinea 2.1%
- everything else 33.7%
- uncultured bacterium 66.2%
- uncultured Chloroflexi bacterium 5.8%
- uncultured beta proteobacterium 2.8%
- uncultured archaeon 2.5%
- uncultured soil bacterium 2.4%
- uncultured prokaryote 1.9%
- uncultured Acidobacteria bacterium 1.7%
- everything else 16.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 82% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 79% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.