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SAMN05560346
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
18,161
Reads
259
Observed features
4.299
Shannon
0.774
Evenness
259
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036690
Per-run QC
- 16S identity
- 98.3%
- Q30
- 76.1%
- Region
- V3-V4
- Read length
- 456 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 38.2%
- Pseudomonadota 28.3%
- Acidobacteriota 13.5%
- Myxococcota 3.7%
- Ignavibacteriota 2.6%
- Chloroflexota 2.4%
- Dependentiae 2.4%
- everything else 8.8%
- Desulfitobacteriia 33.8%
- Gammaproteobacteria 23.6%
- Holophagae 6.2%
- Alphaproteobacteria 4.7%
- Acidobacteriae 4.4%
- Myxococcia 3.1%
- Ignavibacteria 2.6%
- everything else 21.5%
- Desulfitobacteriales 33.8%
- Burkholderiales 15.9%
- Lysobacterales 7.0%
- Holophagales 6.2%
- Incertae Sedis 3.8%
- Terriglobales 3.5%
- Myxococcales 3.1%
- everything else 26.7%
- Desulfitobacteriaceae 33.8%
- Incertae Sedis 7.1%
- Rhodanobacteraceae 7.0%
- Holophagaceae 6.2%
- Rhodocyclaceae 4.8%
- Comamonadaceae 3.6%
- Acidobacteriaceae (Subgroup 1) 3.5%
- everything else 34.0%
- Desulfosporosinus 33.8%
- Incertae Sedis 20.8%
- Rhodanobacter 6.3%
- Rugosibacter 4.8%
- Anaeromyxobacter 2.6%
- Occallatibacter 2.1%
- Castellaniella 2.1%
- everything else 27.6%
- uncultured bacterium 53.0%
- uncultured Firmicutes bacterium 17.8%
- groundwater metagenome 5.1%
- uncultured forest soil bacterium 2.1%
- uncultured Chlorobi bacterium 1.8%
- uncultured Desulfosporosinus sp. 1.7%
- uncultured Desulfuromonas sp. 1.7%
- everything else 16.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 67% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.