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SAMN05560352
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
19,969
Reads
239
Observed features
4.063
Shannon
0.742
Evenness
239
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036702
Per-run QC
- 16S identity
- 50.5%
- Q30
- 76.3%
- Region
- V3-V4
- Read length
- 447 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 49.1%
- Pseudomonadota 34.9%
- Acidobacteriota 4.6%
- Bacteroidota 2.1%
- Chloroflexota 1.8%
- Actinomycetota 1.7%
- Thermodesulfobacteriota 1.5%
- everything else 4.3%
- Desulfitobacteriia 30.3%
- Gammaproteobacteria 28.6%
- Clostridia 16.2%
- Alphaproteobacteria 6.3%
- Holophagae 2.5%
- Bacteroidia 2.1%
- Actinobacteria 1.6%
- everything else 12.4%
- Desulfitobacteriales 30.3%
- Burkholderiales 21.9%
- Clostridiales 14.4%
- Lysobacterales 5.5%
- Rhodospirillales 4.1%
- Holophagales 2.5%
- Incertae Sedis 2.1%
- everything else 19.3%
- Desulfitobacteriaceae 30.3%
- Clostridiaceae 14.4%
- Alcaligenaceae 12.1%
- Comamonadaceae 6.9%
- Rhodanobacteraceae 5.4%
- Magnetospirillaceae 4.1%
- Incertae Sedis 3.2%
- everything else 23.5%
- Desulfosporosinus 30.3%
- Clostridium 14.4%
- Incertae Sedis 14.1%
- Castellaniella 11.9%
- Rhodanobacter 5.1%
- Alicycliphilus 3.1%
- Comamonas 3.0%
- everything else 18.1%
- uncultured bacterium 43.4%
- uncultured Firmicutes bacterium 13.5%
- Castellaniella sp. 4.5A2 9.6%
- Clostridium frigidicarnis 6.5%
- Clostridium sp. LAM-GX-0C10 4.1%
- Rhodanobacter sp. 3.3%
- Comamonas sp. MPI12 3.0%
- everything else 16.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 67% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 54% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 50% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.