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SAMN05560348
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
5,530
Reads
38
Observed features
2.049
Shannon
0.563
Evenness
38
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036698
Per-run QC
- 16S identity
- 99.9%
- Q30
- 73.6%
- Region
- V3-V4
- Read length
- 452 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 78.3%
- Bacillota 14.3%
- Bacteroidota 3.7%
- Acidobacteriota 2.7%
- Actinomycetota 0.8%
- Verrucomicrobiota 0.1%
- Ignavibacteriota 0.1%
- Gammaproteobacteria 75.6%
- Clostridia 10.4%
- Bacteroidia 3.7%
- Alphaproteobacteria 2.7%
- Desulfitobacteriia 2.4%
- Holophagae 1.4%
- Acidobacteriae 1.3%
- everything else 2.5%
- Lysobacterales 58.4%
- Burkholderiales 16.2%
- Clostridiales 4.7%
- Chitinophagales 3.4%
- Oscillospirales 2.5%
- Desulfitobacteriales 2.4%
- Hyphomicrobiales 2.0%
- everything else 10.6%
- Rhodanobacteraceae 55.8%
- Alcaligenaceae 9.8%
- Clostridiaceae 4.7%
- Comamonadaceae 4.1%
- Chitinophagaceae 3.4%
- Lysobacteraceae 2.7%
- Desulfitobacteriaceae 2.4%
- everything else 17.3%
- Rhodanobacter 55.8%
- Castellaniella 9.8%
- Incertae Sedis 5.4%
- Clostridium 4.7%
- Acidovorax 3.6%
- Thermomonas 2.7%
- Desulfosporosinus 2.4%
- everything else 15.8%
- uncultured bacterium 84.6%
- Thermomonas sp. lyso-lm521 2.7%
- Desulfosporosinus sp. enrichment culture 2.4%
- uncultured Massilia sp. 2.3%
- Afipia massiliensis 1.5%
- Clostridium sp. R50 1.3%
- Bacillus cereus 0.8%
- everything else 4.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 61% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.