opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219830
Non-contaminated-control3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
15,253
Reads
643
Observed features
6.049
Shannon
0.936
Evenness
643
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.14, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171675
Per-run QC
- 16S identity
- 97.7%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.8%
- Archaea 1.2%
- Pseudomonadota 19.9%
- Acidobacteriota 19.6%
- Chloroflexota 15.2%
- Verrucomicrobiota 6.3%
- Actinomycetota 5.1%
- Bacteroidota 4.9%
- Myxococcota 4.6%
- everything else 24.5%
- Anaerolineae 11.2%
- Alphaproteobacteria 11.0%
- Gammaproteobacteria 8.9%
- Vicinamibacteria 6.8%
- Verrucomicrobiia 6.2%
- Acidobacteriae 5.3%
- Bacteroidia 4.9%
- everything else 45.8%
- Incertae Sedis 14.7%
- Anaerolineales 6.6%
- Vicinamibacterales 6.3%
- Burkholderiales 5.7%
- Hyphomicrobiales 4.5%
- Saccharimonadales 3.6%
- Sphingomonadales 3.2%
- everything else 55.4%
- Incertae Sedis 37.1%
- Anaerolineaceae 6.6%
- Sphingomonadaceae 3.2%
- Xanthobacteraceae 3.2%
- Pedosphaeraceae 3.0%
- Chthoniobacteraceae 2.7%
- Gemmatimonadaceae 2.4%
- everything else 41.9%
- Incertae Sedis 61.8%
- Sphingomonas 3.1%
- Candidatus Udaeobacter 2.5%
- Micromonospora 1.7%
- Anaerolinea 1.4%
- Mucilaginibacter 1.3%
- Gemmatimonas 1.2%
- everything else 27.0%
- uncultured bacterium 67.6%
- metagenome 3.1%
- uncultured Acidobacteria bacterium 2.9%
- uncultured soil bacterium 1.9%
- uncultured Sphingomonas sp. 1.8%
- uncultured Alphaproteobacteria bacterium 1.6%
- uncultured Verrucomicrobia bacterium 1.4%
- everything else 19.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.