opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219846
Moderate-contaminated-sample9
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
31,489
Reads
812
Observed features
5.922
Shannon
0.884
Evenness
812
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.3, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171659
Per-run QC
- 16S identity
- 97.7%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_19489 · Incertae Sedis 1,512 (4.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.5%
- Archaea 4.5%
- Chloroflexota 40.1%
- Acidobacteriota 17.2%
- Pseudomonadota 11.7%
- Verrucomicrobiota 6.7%
- Planctomycetota 5.1%
- Thermoproteota 4.5%
- Actinomycetota 3.5%
- everything else 11.3%
- Ktedonobacteria 15.8%
- Acidobacteriae 13.8%
- Anaerolineae 13.4%
- Verrucomicrobiia 6.6%
- AD3 6.4%
- Gammaproteobacteria 6.3%
- Alphaproteobacteria 5.4%
- everything else 32.5%
- Incertae Sedis 16.0%
- Ktedonobacterales 13.9%
- Terriglobales 11.6%
- RBG-13-54-9 6.9%
- Anaerolineales 5.0%
- Chthoniobacterales 4.6%
- Nitrosotaleales 3.7%
- everything else 38.2%
- Incertae Sedis 47.6%
- Ktedonobacteraceae 11.6%
- Anaerolineaceae 5.0%
- Chthoniobacteraceae 4.6%
- Nitrosotaleaceae 3.7%
- Pedosphaeraceae 1.7%
- Isosphaeraceae 1.6%
- everything else 24.1%
- Incertae Sedis 66.2%
- HSB OF53-F07 6.8%
- Candidatus Udaeobacter 4.3%
- 1921-2 1.1%
- FCPS473 1.1%
- Anaerolinea 1.1%
- Sphingomonas 1.0%
- everything else 18.4%
- uncultured bacterium 67.8%
- uncultured archaeon 3.5%
- uncultured Ktedonobacter sp. 3.4%
- uncultured soil bacterium 2.9%
- uncultured Acidobacteria bacterium 2.5%
- uncultured Bellilinea sp. 2.4%
- uncultured Chloroflexi bacterium 1.4%
- everything else 16.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.