opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704748
Cd_contaminated_upland_soil_1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
14,029
Reads
532
Observed features
5.776
Shannon
0.92
Evenness
532
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.12, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435165
Per-run QC
- 16S identity
- 97.7%
- Q30
- 98.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.1%
- Archaea 0.9%
- Pseudomonadota 26.6%
- Chloroflexota 26.6%
- Acidobacteriota 18.1%
- Actinomycetota 4.0%
- Verrucomicrobiota 3.7%
- Myxococcota 2.6%
- Bacteroidota 2.4%
- everything else 16.0%
- Anaerolineae 16.9%
- Acidobacteriae 14.4%
- Alphaproteobacteria 13.4%
- Gammaproteobacteria 13.2%
- Ktedonobacteria 3.8%
- Verrucomicrobiia 3.7%
- KD4-96 3.3%
- everything else 31.3%
- Incertae Sedis 11.8%
- RBG-13-54-9 10.4%
- Terriglobales 10.3%
- Anaerolineales 5.0%
- Hyphomicrobiales 4.4%
- Burkholderiales 4.3%
- Ktedonobacterales 3.1%
- everything else 50.8%
- Incertae Sedis 43.2%
- Anaerolineaceae 5.0%
- Xanthobacteraceae 2.9%
- Sphingomonadaceae 2.4%
- Pedosphaeraceae 2.4%
- Solibacteraceae 2.1%
- Ktedonobacteraceae 1.9%
- everything else 40.3%
- Incertae Sedis 60.1%
- Candidatus Solibacter 2.1%
- Sphingomonas 2.0%
- HSB OF53-F07 1.3%
- Bradyrhizobium 1.2%
- Burkholderia-Caballeronia-Paraburkholderia 1.1%
- Acidibacter 1.1%
- everything else 31.0%
- uncultured bacterium 66.8%
- uncultured Acidobacteria bacterium 3.1%
- uncultured soil bacterium 2.0%
- uncultured Anaerolineaceae bacterium 1.5%
- uncultured Bellilinea sp. 1.5%
- metagenome 1.4%
- uncultured Alphaproteobacteria bacterium 1.3%
- everything else 22.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.