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SAMN06704773
Cd_contaminated_sediment_6
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
33,163
Reads
1,072
Observed features
6.465
Shannon
0.927
Evenness
1,072
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.37, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435140
Per-run QC
- 16S identity
- 98.0%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_21711 · RBG-16-58-14 300 (0.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Chloroflexota 21.4%
- Pseudomonadota 19.0%
- Acidobacteriota 11.4%
- Bacteroidota 9.9%
- Verrucomicrobiota 9.9%
- Planctomycetota 6.0%
- Thermodesulfobacteriota 5.2%
- everything else 17.1%
- Anaerolineae 17.9%
- Gammaproteobacteria 17.2%
- Bacteroidia 9.9%
- Verrucomicrobiia 8.4%
- Vicinamibacteria 7.6%
- Planctomycetes 4.6%
- KD4-96 3.4%
- everything else 30.9%
- Anaerolineales 15.6%
- Burkholderiales 12.3%
- Incertae Sedis 11.3%
- Pedosphaerales 6.5%
- Bacteroidales 6.3%
- Vicinamibacterales 4.9%
- Pirellulales 4.1%
- everything else 39.2%
- Incertae Sedis 25.9%
- Anaerolineaceae 15.6%
- Pedosphaeraceae 6.5%
- Rhodocyclaceae 4.2%
- Pirellulaceae 4.1%
- Hydrogenophilaceae 2.6%
- Bacteroidetes vadinHA17 2.6%
- everything else 38.5%
- Incertae Sedis 62.6%
- RBG-16-58-14 2.6%
- Candidatus Anammoximicrobium 2.2%
- Thiobacillus 1.7%
- Anaeromyxobacter 1.2%
- Anaerolinea 1.2%
- Sulfurisoma 1.2%
- everything else 27.3%
- uncultured bacterium 59.0%
- uncultured soil bacterium 8.1%
- uncultured prokaryote 7.8%
- metagenome 5.4%
- uncultured Chloroflexi bacterium 2.2%
- uncultured delta proteobacterium 1.5%
- uncultured Acidobacteria bacterium 1.4%
- everything else 14.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.