opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219840
Moderate-contaminated-sample3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
14,017
Reads
489
Observed features
5.633
Shannon
0.91
Evenness
489
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.24, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171665
Per-run QC
- 16S identity
- 97.7%
- Q30
- 98.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.5%
- Archaea 2.5%
- Chloroflexota 36.2%
- Acidobacteriota 15.3%
- Pseudomonadota 12.3%
- Planctomycetota 8.8%
- Verrucomicrobiota 8.3%
- Candidatus Eremiobacterota 4.3%
- Actinomycetota 4.0%
- everything else 10.9%
- Ktedonobacteria 19.9%
- Acidobacteriae 11.2%
- Verrucomicrobiia 8.3%
- Planctomycetes 7.4%
- Anaerolineae 7.0%
- Alphaproteobacteria 6.5%
- Gammaproteobacteria 5.7%
- everything else 34.0%
- Ktedonobacterales 18.3%
- Incertae Sedis 15.3%
- Terriglobales 9.0%
- Chthoniobacterales 6.1%
- RBG-13-54-9 3.8%
- Planctomycetales 3.3%
- Subgroup 7 3.1%
- everything else 41.1%
- Incertae Sedis 43.0%
- Ktedonobacteraceae 16.1%
- Chthoniobacteraceae 5.9%
- Isosphaeraceae 2.9%
- Anaerolineaceae 2.4%
- Nitrosotaleaceae 2.2%
- Pedosphaeraceae 1.9%
- everything else 25.7%
- Incertae Sedis 60.2%
- HSB OF53-F07 9.5%
- Candidatus Udaeobacter 4.9%
- 1921-2 1.8%
- Sphingomonas 1.5%
- FCPS473 1.3%
- Chthoniobacter 1.0%
- everything else 19.8%
- uncultured bacterium 68.2%
- uncultured Ktedonobacter sp. 4.9%
- uncultured soil bacterium 2.6%
- uncultured archaeon 2.1%
- uncultured Acidobacteria bacterium 2.0%
- uncultured forest soil bacterium 1.7%
- uncultured Bellilinea sp. 1.0%
- everything else 17.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.