opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219847
Moderate-contaminated-sample10
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
25,684
Reads
718
Observed features
5.793
Shannon
0.881
Evenness
718
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.31, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171658
Per-run QC
- 16S identity
- 97.7%
- Q30
- 98.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.7%
- Archaea 1.3%
- Chloroflexota 39.6%
- Acidobacteriota 21.9%
- Pseudomonadota 7.8%
- Verrucomicrobiota 7.7%
- Planctomycetota 5.4%
- Actinomycetota 3.8%
- Candidatus Eremiobacterota 2.3%
- everything else 11.5%
- Acidobacteriae 15.7%
- Ktedonobacteria 13.6%
- Anaerolineae 13.2%
- Verrucomicrobiia 7.7%
- AD3 6.8%
- Planctomycetes 4.5%
- Holophagae 4.4%
- everything else 34.0%
- Incertae Sedis 18.4%
- Terriglobales 13.7%
- Ktedonobacterales 12.6%
- RBG-13-54-9 6.4%
- Chthoniobacterales 5.6%
- Anaerolineales 5.1%
- Subgroup 7 4.3%
- everything else 33.9%
- Incertae Sedis 52.6%
- Ktedonobacteraceae 10.7%
- Chthoniobacteraceae 5.5%
- Anaerolineaceae 5.1%
- Pedosphaeraceae 1.9%
- Isosphaeraceae 1.6%
- Aggregatilineaceae 1.6%
- everything else 21.1%
- Incertae Sedis 68.8%
- HSB OF53-F07 6.8%
- Candidatus Udaeobacter 5.1%
- FCPS473 1.0%
- 1921-2 0.8%
- Acidibacter 0.8%
- Acidothermus 0.8%
- everything else 15.9%
- uncultured bacterium 73.3%
- uncultured Acidobacteria bacterium 4.5%
- uncultured Ktedonobacter sp. 3.8%
- uncultured Chloroflexi bacterium 1.9%
- uncultured Bellilinea sp. 1.8%
- uncultured Anaerolineaceae bacterium 1.3%
- uncultured archaeon 0.9%
- everything else 12.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.