opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704754
Cd_contaminated_upland_soil_7
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
18,905
Reads
563
Observed features
5.851
Shannon
0.924
Evenness
563
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.18, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435159
Per-run QC
- 16S identity
- 98.1%
- Q30
- 98.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_11112 · Incertae Sedis 500 (2.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Chloroflexota 31.2%
- Pseudomonadota 19.7%
- Acidobacteriota 17.3%
- Actinomycetota 9.0%
- Verrucomicrobiota 5.9%
- Planctomycetota 3.5%
- Candidatus Eremiobacterota 2.7%
- everything else 10.9%
- Ktedonobacteria 13.3%
- Acidobacteriae 13.2%
- Alphaproteobacteria 9.9%
- Gammaproteobacteria 9.8%
- Anaerolineae 8.6%
- Verrucomicrobiia 5.8%
- AD3 5.3%
- everything else 34.0%
- Incertae Sedis 13.7%
- Ktedonobacterales 12.0%
- Terriglobales 10.1%
- RBG-13-54-9 6.2%
- Chthoniobacterales 4.7%
- Hyphomicrobiales 3.8%
- Subgroup 7 3.3%
- everything else 46.1%
- Incertae Sedis 41.6%
- Ktedonobacteraceae 10.7%
- Chthoniobacteraceae 4.6%
- Xanthobacteraceae 2.5%
- Acidothermaceae 2.4%
- Sphingomonadaceae 2.3%
- Anaerolineaceae 1.9%
- everything else 34.1%
- Incertae Sedis 53.9%
- HSB OF53-F07 6.8%
- Candidatus Udaeobacter 4.1%
- Acidothermus 2.4%
- Sphingomonas 2.0%
- Acidibacter 1.4%
- Conexibacter 1.3%
- everything else 28.3%
- uncultured bacterium 62.5%
- uncultured Ktedonobacter sp. 3.7%
- uncultured Acidobacteria bacterium 3.2%
- uncultured soil bacterium 3.0%
- uncultured Verrucomicrobia bacterium 1.8%
- metagenome 1.3%
- uncultured forest soil bacterium 1.2%
- everything else 23.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.