opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219842
Moderate-contaminated-sample5
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
7,981
Reads
323
Observed features
5.37
Shannon
0.929
Evenness
323
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.26, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171663
Per-run QC
- 16S identity
- 97.5%
- Q30
- 98.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.7%
- Chloroflexota 35.2%
- Pseudomonadota 31.3%
- Acidobacteriota 7.3%
- Actinomycetota 4.5%
- Bacteroidota 3.3%
- Bacillota 3.0%
- Planctomycetota 2.8%
- everything else 12.6%
- Gammaproteobacteria 20.2%
- Ktedonobacteria 17.1%
- Alphaproteobacteria 11.0%
- AD3 9.2%
- Anaerolineae 5.1%
- Acidobacteriae 4.8%
- Bacteroidia 3.3%
- everything else 29.2%
- Ktedonobacterales 16.1%
- Incertae Sedis 15.7%
- Pseudomonadales 6.1%
- Burkholderiales 5.9%
- Enterobacterales 4.2%
- Terriglobales 3.9%
- Sphingomonadales 3.4%
- everything else 44.6%
- Incertae Sedis 30.3%
- Ktedonobacteraceae 14.1%
- Sphingomonadaceae 3.4%
- Pseudomonadaceae 2.7%
- Burkholderiaceae 2.4%
- Paracoccaceae 2.4%
- Sulfurimonadaceae 2.1%
- everything else 42.7%
- Incertae Sedis 40.5%
- HSB OF53-F07 8.7%
- Pseudomonas 2.7%
- Sphingomonas 2.6%
- Sulfurimonas 2.1%
- Burkholderia-Caballeronia-Paraburkholderia 1.8%
- 1921-2 1.5%
- everything else 40.1%
- uncultured bacterium 52.1%
- uncultured soil bacterium 5.2%
- uncultured Ktedonobacter sp. 3.8%
- uncultured Sphingomonas sp. 2.1%
- Pseudomonas stutzeri 1.6%
- Paraburkholderia fungorum 1.5%
- uncultured Acidobacteria bacterium 1.3%
- everything else 32.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 78% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 75% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.