opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219838
Sevely-contaminated-sample1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- unknown
derived from this sample's metadata and per-run QC
6,556
Reads
243
Observed features
4.979
Shannon
0.906
Evenness
243
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.22, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171667
Per-run QC
- 16S identity
- 97.8%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 96.3%
- Archaea 3.8%
- Chloroflexota 34.2%
- Pseudomonadota 34.1%
- Acidobacteriota 7.2%
- Bacteroidota 3.8%
- Thermoproteota 3.5%
- Campylobacterota 2.6%
- Bacillota 2.4%
- everything else 12.2%
- Gammaproteobacteria 22.0%
- Anaerolineae 20.6%
- Alphaproteobacteria 12.1%
- AD3 7.2%
- Acidobacteriae 4.2%
- Bacteroidia 3.8%
- Campylobacteria 2.6%
- everything else 27.5%
- Incertae Sedis 17.1%
- RBG-13-54-9 9.7%
- Anaerolineales 9.6%
- Burkholderiales 6.2%
- Pseudomonadales 6.1%
- Enterobacterales 5.5%
- Sphingomonadales 4.2%
- everything else 41.8%
- Incertae Sedis 37.6%
- Anaerolineaceae 9.6%
- Sphingomonadaceae 4.2%
- Pseudomonadaceae 3.2%
- Burkholderiaceae 2.6%
- Chitinophagaceae 2.1%
- Paracoccaceae 1.9%
- everything else 38.8%
- Incertae Sedis 49.9%
- Sphingomonas 3.4%
- Pseudomonas 3.2%
- Burkholderia-Caballeronia-Paraburkholderia 2.0%
- Sulfurimonas 1.8%
- RBG-16-58-14 1.7%
- Anaerolinea 1.6%
- everything else 36.3%
- uncultured bacterium 52.4%
- uncultured Bellilinea sp. 4.2%
- uncultured Sphingomonas sp. 2.9%
- uncultured archaeon 2.7%
- uncultured Chloroflexi bacterium 2.1%
- Paraburkholderia fungorum 2.0%
- Pseudomonas stutzeri 1.8%
- everything else 31.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.