opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704749
Cd_contaminated_upland_soil_2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
10,158
Reads
389
Observed features
5.441
Shannon
0.912
Evenness
389
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.13, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435164
Per-run QC
- 16S identity
- 98.1%
- Q30
- 98.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.2%
- Archaea 0.8%
- Pseudomonadota 29.9%
- Chloroflexota 25.2%
- Acidobacteriota 14.9%
- Actinomycetota 3.4%
- Bacteroidota 2.9%
- Bacillota 2.8%
- Planctomycetota 2.8%
- everything else 18.1%
- Gammaproteobacteria 17.0%
- Anaerolineae 14.7%
- Alphaproteobacteria 12.9%
- Acidobacteriae 10.2%
- KD4-96 3.9%
- Ktedonobacteria 3.9%
- Bacteroidia 2.9%
- everything else 34.4%
- Incertae Sedis 13.1%
- RBG-13-54-9 10.3%
- Terriglobales 7.6%
- Burkholderiales 5.0%
- Pseudomonadales 4.1%
- Hyphomicrobiales 4.1%
- Anaerolineales 3.7%
- everything else 52.3%
- Incertae Sedis 42.3%
- Anaerolineaceae 3.7%
- Sphingomonadaceae 2.6%
- Xanthobacteraceae 2.4%
- Ktedonobacteraceae 2.2%
- Pseudomonadaceae 2.1%
- Solibacteraceae 1.8%
- everything else 43.0%
- Incertae Sedis 56.7%
- Sphingomonas 2.2%
- Pseudomonas 2.1%
- Candidatus Solibacter 1.8%
- HSB OF53-F07 1.7%
- Sulfurimonas 1.4%
- Burkholderia-Caballeronia-Paraburkholderia 1.4%
- everything else 32.6%
- uncultured bacterium 60.6%
- uncultured Acidobacteria bacterium 3.1%
- uncultured Chloroflexi bacterium 2.1%
- uncultured Anaerolineaceae bacterium 1.7%
- uncultured Sphingomonas sp. 1.7%
- uncultured Alphaproteobacteria bacterium 1.1%
- Paraburkholderia fungorum 1.0%
- everything else 28.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.