opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219843
Moderate-contaminated-sample6
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
7,013
Reads
283
Observed features
5.235
Shannon
0.927
Evenness
283
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.27, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171662
Per-run QC
- 16S identity
- 97.8%
- Q30
- 98.3%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 36.1%
- Chloroflexota 28.3%
- Acidobacteriota 10.2%
- Bacteroidota 3.7%
- Actinomycetota 3.6%
- Bacillota 3.1%
- Campylobacterota 2.9%
- everything else 12.2%
- Gammaproteobacteria 23.1%
- Alphaproteobacteria 13.0%
- Anaerolineae 10.5%
- Ktedonobacteria 8.6%
- Acidobacteriae 8.0%
- AD3 5.8%
- Bacteroidia 3.7%
- everything else 27.3%
- Incertae Sedis 12.6%
- Ktedonobacterales 7.9%
- Pseudomonadales 7.3%
- Burkholderiales 6.5%
- Terriglobales 5.8%
- RBG-13-54-9 5.5%
- Enterobacterales 5.3%
- everything else 49.1%
- Incertae Sedis 32.2%
- Ktedonobacteraceae 7.2%
- Sphingomonadaceae 4.6%
- Anaerolineaceae 4.3%
- Pseudomonadaceae 3.5%
- Paracoccaceae 3.0%
- Burkholderiaceae 2.6%
- everything else 42.7%
- Incertae Sedis 43.2%
- HSB OF53-F07 4.8%
- Sphingomonas 3.6%
- Pseudomonas 3.5%
- Sulfurimonas 2.2%
- Burkholderia-Caballeronia-Paraburkholderia 2.0%
- Candidatus Udaeobacter 1.8%
- everything else 38.9%
- uncultured bacterium 51.4%
- uncultured soil bacterium 3.7%
- uncultured Sphingomonas sp. 2.9%
- uncultured Acidobacteria bacterium 2.3%
- uncultured Ktedonobacter sp. 2.2%
- Paraburkholderia fungorum 2.0%
- uncultured forest soil bacterium 2.0%
- everything else 33.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 78% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.