opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219841
Moderate-contaminated-sample4
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
34,188
Reads
798
Observed features
6.115
Shannon
0.915
Evenness
798
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.25, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171664
Per-run QC
- 16S identity
- 98.3%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Chloroflexota 34.1%
- Pseudomonadota 17.6%
- Acidobacteriota 11.4%
- Actinomycetota 10.8%
- Verrucomicrobiota 4.0%
- Planctomycetota 3.5%
- Gemmatimonadota 2.8%
- everything else 15.7%
- Ktedonobacteria 15.4%
- Alphaproteobacteria 9.7%
- Acidobacteriae 9.4%
- Anaerolineae 9.3%
- Gammaproteobacteria 7.9%
- AD3 6.7%
- Actinobacteria 6.3%
- everything else 35.3%
- Incertae Sedis 16.3%
- Ktedonobacterales 14.7%
- RBG-13-54-9 6.6%
- Terriglobales 5.4%
- Frankiales 4.5%
- Hyphomicrobiales 4.1%
- Gammaproteobacteria Incertae Sedis 3.3%
- everything else 45.2%
- Incertae Sedis 40.4%
- Ktedonobacteraceae 13.7%
- Acidothermaceae 3.8%
- Unknown Family 3.3%
- Xanthobacteraceae 3.1%
- Chthoniobacteraceae 2.8%
- Gemmatimonadaceae 2.7%
- everything else 30.3%
- Incertae Sedis 58.4%
- HSB OF53-F07 8.4%
- Acidothermus 3.8%
- Acidibacter 3.2%
- Candidatus Udaeobacter 2.7%
- Candidatus Solibacter 2.1%
- Conexibacter 1.7%
- everything else 19.8%
- uncultured bacterium 64.0%
- uncultured Ktedonobacter sp. 3.7%
- uncultured Anaerolineaceae bacterium 2.6%
- uncultured forest soil bacterium 2.5%
- uncultured soil bacterium 2.3%
- uncultured gamma proteobacterium 2.2%
- uncultured Acidobacteria bacterium 2.1%
- everything else 20.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.