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SAMD00160721
microbial community in rhizosphere soil collected at I-3 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
25,016
Reads
1,182
Observed features
6.676
Shannon
0.944
Evenness
1,182
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194902
Per-run QC
- 16S identity
- 79.6%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.7%
- Pseudomonadota 22.2%
- Acidobacteriota 19.6%
- Actinomycetota 13.8%
- Chloroflexota 7.8%
- Planctomycetota 7.4%
- Myxococcota 5.5%
- Verrucomicrobiota 4.0%
- everything else 19.6%
- Alphaproteobacteria 12.4%
- Gammaproteobacteria 9.8%
- Vicinamibacteria 8.0%
- Acidobacteriae 7.9%
- Planctomycetes 6.4%
- Thermoleophilia 6.0%
- Actinobacteria 4.3%
- everything else 45.2%
- Incertae Sedis 12.2%
- Hyphomicrobiales 9.0%
- Burkholderiales 7.1%
- Vicinamibacterales 7.1%
- Gaiellales 4.5%
- Terriglobales 4.3%
- Gemmatales 3.4%
- everything else 52.4%
- Incertae Sedis 38.2%
- Xanthobacteraceae 5.8%
- Gemmataceae 3.4%
- Nitrosomonadaceae 3.0%
- Chthoniobacteraceae 2.5%
- Gemmatimonadaceae 1.8%
- Chitinophagaceae 1.6%
- everything else 43.8%
- Incertae Sedis 61.6%
- Candidatus Udaeobacter 2.2%
- Bradyrhizobium 1.6%
- Acidiferrimicrobium 1.4%
- Ellin6067 1.2%
- Anaeromyxobacter 1.2%
- Candidatus Solibacter 1.1%
- everything else 29.8%
- uncultured bacterium 68.9%
- uncultured Acidobacteria bacterium 3.4%
- metagenome 2.5%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured soil bacterium 1.1%
- uncultured forest soil bacterium 1.0%
- uncultured delta proteobacterium 0.9%
- everything else 20.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.