opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160732
microbial community in surface soil collected at N-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
29,741
Reads
1,371
Observed features
6.815
Shannon
0.943
Evenness
1,371
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194913
Per-run QC
- 16S identity
- 84.2%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 295 (1.0%)
- ASV_22223 · Candidatus Udaeobacter 115 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 27.8%
- Acidobacteriota 21.0%
- Actinomycetota 11.0%
- Planctomycetota 8.1%
- Bacteroidota 5.6%
- Myxococcota 5.1%
- Chloroflexota 4.8%
- everything else 16.7%
- Gammaproteobacteria 15.8%
- Vicinamibacteria 12.4%
- Alphaproteobacteria 12.0%
- Planctomycetes 6.3%
- Bacteroidia 5.6%
- Acidobacteriae 5.3%
- Thermoleophilia 4.8%
- everything else 37.8%
- Vicinamibacterales 11.2%
- Incertae Sedis 10.5%
- Burkholderiales 9.4%
- Hyphomicrobiales 7.3%
- Chitinophagales 4.0%
- Gaiellales 3.5%
- Gemmatales 3.1%
- everything else 51.0%
- Incertae Sedis 35.1%
- Xanthobacteraceae 4.8%
- Chitinophagaceae 3.6%
- Nitrosomonadaceae 3.2%
- Gemmataceae 3.1%
- SC-I-84 2.7%
- Chthoniobacteraceae 2.5%
- everything else 45.0%
- Incertae Sedis 63.0%
- Candidatus Udaeobacter 1.9%
- Ellin6067 1.8%
- Bradyrhizobium 1.6%
- Acidibacter 1.2%
- Candidatus Solibacter 0.9%
- Gaiella 0.8%
- everything else 28.8%
- uncultured bacterium 66.5%
- uncultured Acidobacteria bacterium 4.6%
- metagenome 4.5%
- uncultured soil bacterium 1.2%
- uncultured proteobacterium 1.2%
- Bradyrhizobium elkanii 1.0%
- uncultured beta proteobacterium 0.9%
- everything else 20.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.