opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160752
microbial community in rhizosphere soil collected at M-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
23,243
Reads
1,022
Observed features
6.553
Shannon
0.946
Evenness
1,022
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194932
Per-run QC
- 16S identity
- 82.2%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 248 (1.1%)
- ASV_22223 · Candidatus Udaeobacter 115 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 26.3%
- Acidobacteriota 21.4%
- Actinomycetota 13.8%
- Planctomycetota 8.4%
- Bacteroidota 5.5%
- Verrucomicrobiota 4.8%
- Chloroflexota 4.4%
- everything else 15.3%
- Alphaproteobacteria 13.5%
- Vicinamibacteria 13.2%
- Gammaproteobacteria 12.8%
- Planctomycetes 7.1%
- Thermoleophilia 5.8%
- Bacteroidia 5.5%
- Actinobacteria 5.0%
- everything else 37.1%
- Vicinamibacterales 12.4%
- Incertae Sedis 9.4%
- Hyphomicrobiales 8.7%
- Burkholderiales 8.2%
- Chitinophagales 3.9%
- Gemmatales 3.9%
- Gaiellales 3.4%
- everything else 50.0%
- Incertae Sedis 32.6%
- Xanthobacteraceae 5.2%
- Gemmataceae 3.9%
- Chitinophagaceae 3.7%
- Chthoniobacteraceae 2.8%
- Nitrosomonadaceae 2.7%
- Comamonadaceae 2.4%
- everything else 46.8%
- Incertae Sedis 59.9%
- Candidatus Udaeobacter 2.1%
- Acidibacter 1.4%
- Ellin6067 1.4%
- Bradyrhizobium 1.3%
- Acidiferrimicrobium 0.9%
- Rhizobacter 0.9%
- everything else 32.0%
- uncultured bacterium 66.9%
- uncultured Acidobacteria bacterium 4.3%
- metagenome 3.6%
- uncultured actinobacterium 1.3%
- Bradyrhizobium elkanii 1.1%
- uncultured soil bacterium 1.1%
- uncultured Alphaproteobacteria bacterium 1.0%
- everything else 20.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.