opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160716
microbial community in rhizosphere soil collected at I-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
28,385
Reads
1,312
Observed features
6.766
Shannon
0.942
Evenness
1,312
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194897
Per-run QC
- 16S identity
- 82.6%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 197 (0.7%)
- ASV_33334 · Rhizobacter 150 (0.5%)
- ASV_34773 · Incertae Sedis 173 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 24.1%
- Acidobacteriota 20.7%
- Actinomycetota 13.4%
- Chloroflexota 7.4%
- Planctomycetota 6.5%
- Verrucomicrobiota 5.1%
- Bacteroidota 4.5%
- everything else 18.3%
- Alphaproteobacteria 12.4%
- Gammaproteobacteria 11.6%
- Vicinamibacteria 10.2%
- Acidobacteriae 6.3%
- Thermoleophilia 5.5%
- Planctomycetes 5.3%
- Verrucomicrobiia 5.1%
- everything else 43.6%
- Incertae Sedis 11.4%
- Vicinamibacterales 9.5%
- Hyphomicrobiales 8.7%
- Burkholderiales 8.4%
- Chthoniobacterales 3.9%
- Terriglobales 3.6%
- Gaiellales 3.5%
- everything else 51.0%
- Incertae Sedis 36.0%
- Xanthobacteraceae 5.6%
- Chthoniobacteraceae 3.7%
- Nitrosomonadaceae 3.3%
- Chitinophagaceae 3.2%
- Gemmataceae 2.7%
- Gemmatimonadaceae 2.5%
- everything else 43.0%
- Incertae Sedis 59.9%
- Candidatus Udaeobacter 3.0%
- Bradyrhizobium 1.6%
- Ellin6067 1.5%
- Acidiferrimicrobium 1.3%
- Acidibacter 0.9%
- Ferruginibacter 0.9%
- everything else 30.9%
- uncultured bacterium 67.6%
- uncultured Acidobacteria bacterium 4.4%
- metagenome 4.4%
- uncultured soil bacterium 1.4%
- Bradyrhizobium elkanii 1.3%
- uncultured Verrucomicrobia bacterium 1.1%
- uncultured actinobacterium 1.1%
- everything else 18.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.