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SAMD00160722
microbial community in rhizosphere soil collected at I-3 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
22,038
Reads
1,078
Observed features
6.61
Shannon
0.947
Evenness
1,078
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194903
Per-run QC
- 16S identity
- 82.4%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.7%
- Pseudomonadota 24.2%
- Acidobacteriota 20.0%
- Actinomycetota 12.1%
- Chloroflexota 8.0%
- Planctomycetota 6.4%
- Myxococcota 5.5%
- Verrucomicrobiota 4.0%
- everything else 19.7%
- Alphaproteobacteria 13.4%
- Gammaproteobacteria 10.8%
- Acidobacteriae 8.3%
- Vicinamibacteria 7.7%
- Planctomycetes 5.3%
- Thermoleophilia 5.2%
- Verrucomicrobiia 4.0%
- everything else 45.3%
- Incertae Sedis 12.1%
- Hyphomicrobiales 10.2%
- Burkholderiales 8.0%
- Vicinamibacterales 6.9%
- Terriglobales 4.3%
- Gaiellales 4.0%
- Gemmatales 2.9%
- everything else 51.8%
- Incertae Sedis 36.7%
- Xanthobacteraceae 6.5%
- Nitrosomonadaceae 3.4%
- Gemmataceae 2.9%
- Chthoniobacteraceae 2.4%
- Gemmatimonadaceae 2.3%
- Chitinophagaceae 1.9%
- everything else 44.0%
- Incertae Sedis 61.0%
- Candidatus Udaeobacter 2.0%
- Bradyrhizobium 1.6%
- Ellin6067 1.4%
- Candidatus Solibacter 1.3%
- Anaeromyxobacter 1.2%
- Acidiferrimicrobium 1.2%
- everything else 30.3%
- uncultured bacterium 67.5%
- uncultured Acidobacteria bacterium 3.2%
- metagenome 2.4%
- Bradyrhizobium elkanii 1.4%
- uncultured forest soil bacterium 1.3%
- uncultured Alphaproteobacteria bacterium 1.2%
- uncultured soil bacterium 1.2%
- everything else 22.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.