opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160717
microbial community in rhizosphere soil collected at I-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,391
Reads
1,319
Observed features
6.788
Shannon
0.945
Evenness
1,319
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194898
Per-run QC
- 16S identity
- 82.1%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 155 (0.6%)
- ASV_33334 · Rhizobacter 125 (0.5%)
- ASV_34773 · Incertae Sedis 159 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 24.3%
- Acidobacteriota 19.7%
- Actinomycetota 14.0%
- Chloroflexota 8.1%
- Planctomycetota 7.7%
- Verrucomicrobiota 4.6%
- Bacteroidota 4.5%
- everything else 17.2%
- Alphaproteobacteria 12.6%
- Gammaproteobacteria 11.7%
- Vicinamibacteria 9.4%
- Planctomycetes 6.7%
- Thermoleophilia 5.5%
- Acidobacteriae 5.2%
- Actinobacteria 5.1%
- everything else 43.8%
- Incertae Sedis 11.4%
- Hyphomicrobiales 8.7%
- Vicinamibacterales 8.6%
- Burkholderiales 8.2%
- Chitinophagales 3.6%
- Gaiellales 3.5%
- Chthoniobacterales 3.4%
- everything else 52.7%
- Incertae Sedis 34.7%
- Xanthobacteraceae 5.2%
- Chitinophagaceae 3.3%
- Gemmataceae 3.3%
- Chthoniobacteraceae 3.2%
- Nitrosomonadaceae 2.7%
- Comamonadaceae 2.0%
- everything else 45.6%
- Incertae Sedis 59.5%
- Candidatus Udaeobacter 2.4%
- Ellin6067 1.4%
- Bradyrhizobium 1.4%
- Acidiferrimicrobium 1.0%
- Ferruginibacter 0.9%
- Rhizobacter 0.9%
- everything else 32.4%
- uncultured bacterium 66.9%
- metagenome 4.8%
- uncultured Acidobacteria bacterium 3.5%
- uncultured soil bacterium 1.1%
- uncultured actinobacterium 1.0%
- Bradyrhizobium elkanii 1.0%
- uncultured Comamonadaceae bacterium 0.9%
- everything else 20.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.