opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160730
microbial community in surface soil collected at N-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
27,241
Reads
1,238
Observed features
6.755
Shannon
0.949
Evenness
1,238
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194911
Per-run QC
- 16S identity
- 79.4%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_11112 · Bradyrhizobium 242 (0.9%)
- ASV_22223 · Candidatus Udaeobacter 109 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 29.0%
- Acidobacteriota 18.1%
- Actinomycetota 14.2%
- Bacteroidota 6.4%
- Planctomycetota 6.3%
- Myxococcota 5.3%
- Chloroflexota 4.9%
- everything else 15.7%
- Gammaproteobacteria 16.8%
- Alphaproteobacteria 12.2%
- Vicinamibacteria 9.6%
- Bacteroidia 6.4%
- Thermoleophilia 5.8%
- Actinobacteria 5.3%
- Acidobacteriae 5.2%
- everything else 38.7%
- Burkholderiales 10.6%
- Incertae Sedis 10.3%
- Vicinamibacterales 8.5%
- Hyphomicrobiales 7.4%
- Gaiellales 4.2%
- Chitinophagales 4.1%
- Polyangiales 2.4%
- everything else 52.4%
- Incertae Sedis 31.1%
- Xanthobacteraceae 4.8%
- Nitrosomonadaceae 4.0%
- Chitinophagaceae 3.6%
- Comamonadaceae 2.5%
- Gemmataceae 2.3%
- SC-I-84 2.3%
- everything else 49.3%
- Incertae Sedis 57.5%
- Ellin6067 2.1%
- Bradyrhizobium 1.6%
- Candidatus Solibacter 1.4%
- Acidibacter 1.4%
- Candidatus Udaeobacter 1.3%
- Acidiferrimicrobium 1.1%
- everything else 33.7%
- uncultured bacterium 64.7%
- metagenome 4.9%
- uncultured Acidobacteria bacterium 4.3%
- uncultured proteobacterium 1.4%
- uncultured soil bacterium 1.1%
- uncultured beta proteobacterium 1.0%
- uncultured delta proteobacterium 1.0%
- everything else 21.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.