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SAMD00160753
microbial community in rhizosphere soil collected at M-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
20,050
Reads
985
Observed features
6.52
Shannon
0.946
Evenness
985
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194933
Per-run QC
- 16S identity
- 82.5%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 28.0%
- Acidobacteriota 18.1%
- Actinomycetota 15.3%
- Planctomycetota 7.7%
- Bacteroidota 5.8%
- Verrucomicrobiota 4.7%
- Chloroflexota 4.5%
- everything else 15.9%
- Alphaproteobacteria 14.8%
- Gammaproteobacteria 13.2%
- Vicinamibacteria 9.4%
- Thermoleophilia 6.8%
- Planctomycetes 6.4%
- Bacteroidia 5.8%
- Actinobacteria 5.5%
- everything else 38.1%
- Incertae Sedis 10.2%
- Hyphomicrobiales 9.7%
- Burkholderiales 8.6%
- Vicinamibacterales 8.4%
- Chitinophagales 4.4%
- Gaiellales 4.2%
- Gemmatales 3.4%
- everything else 51.1%
- Incertae Sedis 32.1%
- Xanthobacteraceae 5.8%
- Chitinophagaceae 4.2%
- Gemmataceae 3.4%
- Nitrosomonadaceae 3.0%
- Chthoniobacteraceae 2.5%
- Comamonadaceae 2.5%
- everything else 46.4%
- Incertae Sedis 58.0%
- Candidatus Udaeobacter 2.0%
- Bradyrhizobium 1.7%
- Acidibacter 1.5%
- Ellin6067 1.5%
- Acidiferrimicrobium 1.1%
- Puia 1.0%
- everything else 33.3%
- uncultured bacterium 65.0%
- uncultured Acidobacteria bacterium 5.3%
- metagenome 3.6%
- uncultured soil bacterium 1.3%
- uncultured actinobacterium 1.3%
- uncultured Comamonadaceae bacterium 1.2%
- uncultured Alphaproteobacteria bacterium 1.1%
- everything else 21.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.