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SAMD00160748
microbial community in surface soil collected at M-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
25,240
Reads
1,285
Observed features
6.772
Shannon
0.946
Evenness
1,285
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194928
Per-run QC
- 16S identity
- 82.8%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 216 (0.9%)
- ASV_33334 · Rhizobacter 180 (0.7%)
- ASV_34773 · Incertae Sedis 120 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 26.8%
- Acidobacteriota 20.4%
- Actinomycetota 13.7%
- Planctomycetota 8.6%
- Bacteroidota 6.7%
- Chloroflexota 4.9%
- Verrucomicrobiota 4.5%
- everything else 14.5%
- Alphaproteobacteria 13.5%
- Gammaproteobacteria 13.3%
- Vicinamibacteria 12.6%
- Planctomycetes 6.9%
- Bacteroidia 6.7%
- Thermoleophilia 5.7%
- Actinobacteria 5.2%
- everything else 36.1%
- Vicinamibacterales 11.7%
- Incertae Sedis 10.1%
- Burkholderiales 9.3%
- Hyphomicrobiales 8.8%
- Chitinophagales 5.0%
- Gemmatales 3.5%
- Chthoniobacterales 3.2%
- everything else 48.3%
- Incertae Sedis 31.1%
- Xanthobacteraceae 5.4%
- Chitinophagaceae 4.7%
- Gemmataceae 3.5%
- Nitrosomonadaceae 3.3%
- Chthoniobacteraceae 2.8%
- Comamonadaceae 2.3%
- everything else 47.0%
- Incertae Sedis 58.1%
- Candidatus Udaeobacter 1.9%
- Bradyrhizobium 1.7%
- Ellin6067 1.7%
- Ferruginibacter 1.2%
- Acidiferrimicrobium 1.1%
- Acidibacter 1.0%
- everything else 33.3%
- uncultured bacterium 65.6%
- uncultured Acidobacteria bacterium 5.6%
- metagenome 5.0%
- Bradyrhizobium elkanii 1.3%
- uncultured soil bacterium 1.3%
- uncultured beta proteobacterium 1.3%
- uncultured Verrucomicrobia bacterium 1.3%
- everything else 18.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.