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SAMD00160750
microbial community in surface soil collected at M-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
28,128
Reads
1,417
Observed features
6.862
Shannon
0.946
Evenness
1,417
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194930
Per-run QC
- 16S identity
- 81.3%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 300 (1.1%)
- ASV_33334 · Rhizobacter 155 (0.6%)
- ASV_34773 · Incertae Sedis 132 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 25.7%
- Acidobacteriota 19.1%
- Actinomycetota 14.5%
- Planctomycetota 7.6%
- Bacteroidota 6.7%
- Chloroflexota 6.3%
- Verrucomicrobiota 5.2%
- everything else 14.9%
- Alphaproteobacteria 13.9%
- Gammaproteobacteria 11.8%
- Vicinamibacteria 11.7%
- Bacteroidia 6.7%
- Planctomycetes 6.1%
- Actinobacteria 6.0%
- Thermoleophilia 5.9%
- everything else 37.9%
- Vicinamibacterales 10.8%
- Incertae Sedis 10.5%
- Hyphomicrobiales 9.0%
- Burkholderiales 8.2%
- Chitinophagales 4.8%
- Gaiellales 3.5%
- Chthoniobacterales 3.5%
- everything else 49.6%
- Incertae Sedis 31.0%
- Xanthobacteraceae 5.7%
- Chitinophagaceae 4.3%
- Gemmataceae 3.2%
- Nitrosomonadaceae 2.9%
- Chthoniobacteraceae 2.9%
- Gemmatimonadaceae 2.2%
- everything else 47.6%
- Incertae Sedis 58.0%
- Bradyrhizobium 2.1%
- Candidatus Udaeobacter 1.9%
- Ellin6067 1.4%
- Acidibacter 1.1%
- Chthoniobacter 1.0%
- Acidiferrimicrobium 1.0%
- everything else 33.6%
- uncultured bacterium 65.3%
- metagenome 5.4%
- uncultured Acidobacteria bacterium 4.7%
- Bradyrhizobium elkanii 1.4%
- uncultured soil bacterium 1.2%
- uncultured Verrucomicrobia bacterium 1.1%
- uncultured Alphaproteobacteria bacterium 1.1%
- everything else 19.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.