opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160735
microbial community in rhizosphere soil collected at N-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
29,329
Reads
1,260
Observed features
6.736
Shannon
0.944
Evenness
1,260
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194916
Per-run QC
- 16S identity
- 81.0%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 419 (1.4%)
- ASV_22223 · Candidatus Udaeobacter 132 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 29.9%
- Acidobacteriota 16.5%
- Actinomycetota 13.6%
- Planctomycetota 10.7%
- Bacteroidota 7.0%
- Verrucomicrobiota 5.1%
- Chloroflexota 4.3%
- everything else 13.0%
- Gammaproteobacteria 15.6%
- Alphaproteobacteria 14.3%
- Planctomycetes 8.9%
- Vicinamibacteria 8.0%
- Bacteroidia 7.0%
- Acidobacteriae 5.9%
- Thermoleophilia 5.7%
- everything else 34.6%
- Hyphomicrobiales 9.1%
- Burkholderiales 8.9%
- Incertae Sedis 8.2%
- Vicinamibacterales 7.1%
- Gemmatales 4.3%
- Gaiellales 4.0%
- Chitinophagales 4.0%
- everything else 54.3%
- Incertae Sedis 28.7%
- Xanthobacteraceae 6.2%
- Gemmataceae 4.3%
- Chitinophagaceae 3.7%
- Chthoniobacteraceae 3.0%
- Nitrosomonadaceae 2.8%
- SC-I-84 2.2%
- everything else 49.1%
- Incertae Sedis 56.2%
- Candidatus Udaeobacter 2.3%
- Bradyrhizobium 2.2%
- Ellin6067 1.7%
- Acidibacter 1.6%
- Chryseobacterium 1.3%
- Candidatus Solibacter 1.1%
- everything else 33.6%
- uncultured bacterium 63.1%
- metagenome 3.9%
- uncultured Acidobacteria bacterium 3.7%
- Bradyrhizobium elkanii 1.4%
- Chryseobacterium formosense 1.3%
- uncultured proteobacterium 1.3%
- uncultured planctomycete 1.3%
- everything else 24.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.