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SAMD00160737
microbial community in surface soil collected at N-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
24,866
Reads
1,133
Observed features
6.619
Shannon
0.941
Evenness
1,133
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194918
Per-run QC
- 16S identity
- 80.1%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 28.8%
- Actinomycetota 19.8%
- Acidobacteriota 16.2%
- Planctomycetota 10.6%
- Verrucomicrobiota 5.0%
- Chloroflexota 4.9%
- Bacteroidota 3.6%
- everything else 11.2%
- Alphaproteobacteria 18.1%
- Gammaproteobacteria 10.7%
- Thermoleophilia 9.3%
- Planctomycetes 9.2%
- Acidobacteriae 8.1%
- Actinobacteria 7.5%
- Vicinamibacteria 6.0%
- everything else 31.1%
- Hyphomicrobiales 10.5%
- Incertae Sedis 7.3%
- Burkholderiales 6.4%
- Gaiellales 6.1%
- Vicinamibacterales 5.8%
- Gemmatales 3.8%
- Solirubrobacterales 3.2%
- everything else 57.0%
- Incertae Sedis 31.1%
- Xanthobacteraceae 7.5%
- Gemmataceae 3.8%
- Isosphaeraceae 2.4%
- Chitinophagaceae 2.3%
- Acidothermaceae 2.2%
- Chthoniobacteraceae 2.2%
- everything else 48.5%
- Incertae Sedis 58.7%
- Acidothermus 2.2%
- Bradyrhizobium 2.2%
- Candidatus Udaeobacter 1.7%
- Candidatus Solibacter 1.6%
- Pseudolabrys 1.6%
- Acidiferrimicrobium 1.3%
- everything else 30.8%
- uncultured bacterium 66.9%
- uncultured Acidobacteria bacterium 4.1%
- metagenome 2.8%
- uncultured forest soil bacterium 1.9%
- Bradyrhizobium elkanii 1.4%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured planctomycete 1.2%
- everything else 20.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.