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SAMD00160740
microbial community in rhizosphere soil collected at N-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
31,427
Reads
1,334
Observed features
6.731
Shannon
0.935
Evenness
1,334
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194921
Per-run QC
- 16S identity
- 81.2%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 29.4%
- Actinomycetota 17.6%
- Acidobacteriota 15.0%
- Planctomycetota 11.8%
- Verrucomicrobiota 5.8%
- Bacteroidota 5.8%
- Chloroflexota 4.0%
- everything else 10.7%
- Alphaproteobacteria 17.9%
- Gammaproteobacteria 11.5%
- Planctomycetes 10.3%
- Thermoleophilia 8.5%
- Acidobacteriae 7.6%
- Actinobacteria 6.6%
- Vicinamibacteria 5.9%
- everything else 31.7%
- Hyphomicrobiales 10.9%
- Burkholderiales 6.4%
- Incertae Sedis 5.8%
- Vicinamibacterales 5.8%
- Gaiellales 5.3%
- Chitinophagales 3.9%
- Gemmatales 3.8%
- everything else 58.1%
- Incertae Sedis 27.2%
- Xanthobacteraceae 8.0%
- Gemmataceae 3.8%
- Chitinophagaceae 3.7%
- Chthoniobacteraceae 2.9%
- Isosphaeraceae 2.8%
- Pirellulaceae 2.2%
- everything else 49.4%
- Incertae Sedis 55.1%
- Bradyrhizobium 2.8%
- Candidatus Udaeobacter 2.1%
- Acidothermus 1.9%
- Puia 1.6%
- Pseudolabrys 1.5%
- Candidatus Solibacter 1.4%
- everything else 33.6%
- uncultured bacterium 64.5%
- uncultured Acidobacteria bacterium 3.7%
- metagenome 3.4%
- Bradyrhizobium elkanii 2.7%
- uncultured forest soil bacterium 2.2%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured proteobacterium 1.2%
- everything else 21.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.