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SAMD00160741
microbial community in rhizosphere soil collected at N-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,113
Reads
1,181
Observed features
6.608
Shannon
0.934
Evenness
1,181
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194922
Per-run QC
- 16S identity
- 82.2%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 421 (1.6%)
- ASV_33334 · Rhizobacter 77 (0.3%)
- ASV_34773 · Incertae Sedis 100 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 29.6%
- Actinomycetota 22.6%
- Acidobacteriota 14.6%
- Planctomycetota 8.9%
- Verrucomicrobiota 4.5%
- Chloroflexota 4.5%
- Bacteroidota 3.8%
- everything else 11.5%
- Alphaproteobacteria 18.6%
- Thermoleophilia 11.5%
- Gammaproteobacteria 11.0%
- Acidobacteriae 8.3%
- Actinobacteria 8.3%
- Planctomycetes 7.6%
- Vicinamibacteria 4.6%
- everything else 30.1%
- Hyphomicrobiales 10.4%
- Gaiellales 7.5%
- Incertae Sedis 6.8%
- Burkholderiales 6.8%
- Vicinamibacterales 4.6%
- Solirubrobacterales 4.0%
- Terriglobales 3.7%
- everything else 56.2%
- Incertae Sedis 29.7%
- Xanthobacteraceae 7.8%
- Gemmataceae 2.7%
- Gemmatimonadaceae 2.3%
- Acidothermaceae 2.3%
- Chitinophagaceae 2.3%
- Solirubrobacteraceae 2.3%
- everything else 50.6%
- Incertae Sedis 55.6%
- Bradyrhizobium 2.8%
- Acidothermus 2.3%
- Pseudolabrys 1.7%
- Candidatus Udaeobacter 1.6%
- Acidiferrimicrobium 1.5%
- Candidatus Solibacter 1.5%
- everything else 33.1%
- uncultured bacterium 66.4%
- uncultured Acidobacteria bacterium 3.9%
- metagenome 2.9%
- Bradyrhizobium elkanii 2.4%
- uncultured forest soil bacterium 1.6%
- uncultured Alphaproteobacteria bacterium 1.5%
- uncultured proteobacterium 1.0%
- everything else 20.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.